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Microbe : Nakamurella multipartita

Microbe Description

NBRC No. 105858
Scientific name Nakamurella multipartita
Synonymous name Microsphaera multipartita
History JCM 9543 <- K. Nakamura, Y-104
Other culture collection No. ATCC 700099=CCM 4621=CIP 104796=DSM 44233=FERM P-14709=JCM 9543=KACC 20258
Other No. Y-104
Reference
15143055
Proposal of Nakamurella gen. nov. as a substitute for the bacterial genus Microsphaera Yoshimi et al. 1996 and Nakamurellaceae fam. nov. as a substitute for the illegitimate bacterial family Microsphaeraceae Rainey et al. 1997. (Int J Syst Evol Microbiol. 2004)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseNamu_1190
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseNamu_0547
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseNamu_0075
TRPE
(NRULE_0143)
Anthranilate synthase component INamu_3078
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseNamu_1846
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseNamu_2775
Bioplastic degradation(NFUNC_0015)
RequireB
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseNamu_1984 Namu_1990 Namu_2820 Namu_0493 Namu_0209
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseNamu_4877
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseNamu_5339
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseNamu_0717
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinNamu_4920 Namu_2907 Namu_2904
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNamu_1664 Namu_2906 Namu_4001
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNamu_2906 Namu_4001 Namu_1664
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinNamu_2905
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseNamu_4391
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseNamu_2317
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseNamu_1107
PANC
(NRULE_0118)
Pantothenate synthetaseNamu_2314
Phenol degradation(NFUNC_0028)
RequireC
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseNamu_0227
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseNamu_0741
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentNamu_2412 Namu_2487
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinNamu_2246 Namu_4687 Namu_3250 Namu_0747
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseNamu_5120
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseNamu_4151
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Namu_4151
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDNamu_0753
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseNamu_4150
RIBE
(NRULE_0204)
Riboflavin synthaseNamu_4152
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFNamu_2214
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseNamu_2794
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseNamu_2793
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeNamu_3089 Namu_2795
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseNamu_3091
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseNamu_4915
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseNamu_4915
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSNamu_3415
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTNamu_3399

Genomic Overview

BioProject IDPRJNA29537
Locus_tagNAMU
INSDC entriesCP001737
Sequence statusComplete
Current status
Contig number1
Size(bp) 6,060,298
Gene 5,240
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of Nakamurella multipartita type strain (Y-104). (Stand Genomic Sci. 2010) PMID: 21304699

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.7 MB 1.5 MB 1.1 MB 401.6 KB