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微生物 : Meiothermus silvanus

微生物株情報

NBRC番号 106475
学名 Meiothermus silvanus
別名(シノニム) Thermus silvanus
由来 DSM 9946 <- Univ. Coimbra (M.S. da Costa)
他保存機関番号 ATCC 700542=BCRC 17112=DSM 9946=NCIMB 13440
他株番号 VI-R2
参考文献
7547281
Thermus silvanus sp. nov. and Thermus chliarophilus sp. nov., two new species related to thermus ruber but with lower growth temperatures. (Int J Syst Bacteriol. 1995)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseMesil_0325
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseMesil_2856
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須B
AAC6
(NRULE_0150)
Aminoglycoside N(6')-acetyltransferaseMesil_2409
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須B
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferaseMesil_0540
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseMesil_0966
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseMesil_3523 Mesil_0341
TRPE
(NRULE_0143)
Anthranilate synthase component IMesil_0342
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseMesil_2557
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseMesil_0882
Kanamycin resistance(NFUNC_0052)
必須A
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferaseMesil_0540
C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseMesil_0966
任意 
AAC6
(NRULE_0150)
Aminoglycoside N(6')-acetyltransferaseMesil_2409
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseMesil_1148
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinMesil_1560 Mesil_2199 Mesil_0669
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMesil_0885 Mesil_1558 Mesil_2057 Mesil_3109
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMesil_1558 Mesil_2057 Mesil_0885 Mesil_3109
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinMesil_1557
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseMesil_2312
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinMesil_1004 Mesil_3142 Mesil_2803 Mesil_0943 Mesil_0471
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseMesil_2313 Mesil_0602
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseMesil_3464
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Mesil_3464
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDMesil_3462
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseMesil_3465
RIBE
(NRULE_0204)
Riboflavin synthaseMesil_3463
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFMesil_1650
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseMesil_2014
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSMesil_2040
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTMesil_2041

ゲノム配列情報

BioProject IDPRJNA29551
ローカスタグ
INSDC entriesCP002042
ステータスComplete
解析状況
コンティグ数3
サイズ(bp) 3,721,669
遺伝子数 3,505
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of Meiothermus silvanus type strain (VI-R2). (Stand Genomic Sci. 2010) PMID: 21304690

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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