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微生物 : Gordonia sihwensis

微生物株情報

NBRC番号 108236
学名 Gordonia sihwensis
別名(シノニム) 該当データなし
由来 IFM 10619 <- DSM 44576 <- K.K. Kim, SPR2 <- C.S. Lee
他保存機関番号 IFM 10619=JCM 13435=BCRC 16380=CIP 108158=DSM 44576=NRRL B-24155
他株番号 SPR2
参考文献
13130028
Gordonia sihwensis sp. nov., a novel nitrate-reducing bacterium isolated from a wastewater-treatment bioreactor. (Int J Syst Evol Microbiol. 2003)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGSI01S_21_00140
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGSI01S_08_01750 GSI01S_17_00170
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGSI01S_09_00270 GSI01S_09_00250
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGSI01S_09_00250 GSI01S_09_00270
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGSI01S_19_00310 GSI01S_28_00270 GSI01S_29_00510 GSI01S_08_00630 GSI01S_08_01800 GSI01S_09_00230
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGSI01S_09_00260
任意 
RUBA
(NRULE_0039)
RubredoxinGSI01S_17_00150 GSI01S_17_00160
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitGSI01S_09_00240
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGSI01S_07_00620 GSI01S_06_01270 GSI01S_28_00260 GSI01S_20_00090 GSI01S_25_00100 GSI01S_20_00210 GSI01S_20_01010 GSI01S_20_00920
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGSI01S_05_00520
ARSC1
(NRULE_0017)
Arsenate reductaseGSI01S_19_00680 GSI01S_32_00260
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGSI01S_03_01170
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGSI01S_15_01220
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGSI01S_15_01230
ECTC
(NRULE_0188)
L-ectoine synthaseGSI01S_15_01210
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGSI01S_38_00170
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGSI01S_20_00590
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGSI01S_15_01220
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGSI01S_15_01230
 
ECTC
(NRULE_0188)
L-ectoine synthaseGSI01S_15_01210
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGSI01S_10_00730
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGSI01S_42_00020
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGSI01S_30_00310 GSI01S_08_01170
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGSI01S_30_00280 GSI01S_08_01160 GSI01S_17_00250
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGSI01S_14_01440
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGSI01S_08_01160 GSI01S_17_00250 GSI01S_30_00280
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGSI01S_08_01150
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGSI01S_09_00270 GSI01S_09_00250
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGSI01S_09_00270 GSI01S_09_00250
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitGSI01S_09_00240
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseGSI01S_15_00850
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGSI01S_29_00510 GSI01S_08_01800 GSI01S_08_00630 GSI01S_09_00230 GSI01S_19_00310 GSI01S_28_00270
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGSI01S_09_00260
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGSI01S_20_00210 GSI01S_20_01010 GSI01S_20_00920 GSI01S_07_00620 GSI01S_06_01270 GSI01S_20_00090 GSI01S_28_00260 GSI01S_25_00100
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGSI01S_01_02430 GSI01S_02_00130 GSI01S_05_00270 GSI01S_25_00070
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGSI01S_25_00850
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGSI01S_25_00860
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinGSI01S_03_00550
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinGSI01S_03_00540
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinGSI01S_03_00530
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinGSI01S_03_00520
C
BCCT
(NRULE_0220)
BCCT family transporterGSI01S_29_00770
E
OPUE
(NRULE_0222)
Sodium/proline symporterGSI01S_14_01160
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGSI01S_13_01650
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGSI01S_48_00110

ゲノム配列情報

BioProject IDPRJDB469
ローカスタグGSI01S
INSDC entriesBANU00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数64
サイズ(bp) 4,140,890
遺伝子数 3,904
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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