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Microbe : Rhodobacter sphaeroides

Microbe Description

NBRC No. 12203
Scientific name Rhodobacter sphaeroides
Synonymous name Rhodopseudomonas sphaeroides
History IFO 12203 <- NCIB 8253 <- S.R. Elsden <- C.B. van Niel
Other culture collection No. ATCC 17023=DSM 158=NCIB 8253=NCIB 8287
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseRSP_2460
n-alkane hydroxylation(NFUNC_0008)
RequireC
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitRSP_2794 RSP_2792
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitRSP_2794 RSP_2792
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRSP_2793 RSP_3979
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinRSP_2795
Participant 
RUBA
(NRULE_0039)
RubredoxinRSP_0503
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRSP_3978 RSP_1396
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseRSP_2002
TRPE
(NRULE_0143)
Anthranilate synthase component IRSP_2004
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseRSP_2632
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRSP_3728
Arsenical resistance(NFUNC_0004)
RequireE
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRSP_3126
ARSC2
(NRULE_0018)
Arsenate reductaseRSP_4210
Participant 
ARSH
(NRULE_0021)
ArsH proteinRSP_2731
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRSP_1150
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CRSP_3749
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseRSP_2184
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRSP_0383
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseRSP_3990
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRSP_0382
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRSP_0747
 
PHAP3
(NRULE_0376)
PhasinRSP_0381
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CRSP_3749
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRSP_3874 RSP_0094 RSP_4034 RSP_3948 RSP_3869 RSP_3872
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRSP_3874
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRSP_0460 RSP_1177 RSP_3697 RSP_3861 RSP_3871 RSP_0042 RSP_2873
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRSP_2889
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRSP_2873 RSP_1177 RSP_3871 RSP_3861 RSP_3697 RSP_0460 RSP_0042
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRSP_3874
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinRSP_3869
Nitrogenase(NFUNC_0094)
RequireA
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainRSP_0540
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainRSP_0539
VNFH
(NRULE_0353)
Nitrogenase reductaseRSP_0541
D-Psicose biosynthesis(NFUNC_0065)
RequireA
DTE
(NRULE_0230)
D-tagatose 3-epimeraseRSP_3671
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseRSP_0792
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BRSP_0793
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ERSP_0790
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRSP_0757
RIBA
(NRULE_0201)
GTP cyclohydrolase-2RSP_0757 RSP_0846
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDRSP_0393
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRSP_0756
RIBE
(NRULE_0204)
Riboflavin synthaseRSP_0758
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRSP_2304
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseRSP_2452
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseRSP_2450
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRSP_2226 RSP_2449 RSP_2884
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseRSP_2446
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRSP_0948
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRSP_0949
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinRSP_3998
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinRSP_3999
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinRSP_3057 RSP_4000
C
BCCT
(NRULE_0220)
BCCT family transporterRSP_3080

Genomic Overview

BioProject IDPRJNA56
Locus_tag
INSDC entriesCP000143, CP000144
Sequence statusComplete
Current status
Contig number7
Size(bp) 4,603,060
Gene 4,242
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Revised sequence and annotation of the Rhodobacter sphaeroides 2.4.1 genome. (J Bacteriol. 2012) PMID: 23209255

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
uncompressed
1.3 MB 1.2 MB 853.0 KB 343.0 KB