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Microbe : Sporichthya polymorpha

Microbe Description

NBRC No. 12702
Scientific name Sporichthya polymorpha
Synonymous name Not assigned
History IFO 12702 <- KCC A-0089 <- IMRU 3913
Other culture collection No. ATCC 23823=DSM 43042=JCM 3089=NRRL B-3709=VKM Ac-1863
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseSpopo_31_04360
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseSpopo_31_08430
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseSpopo_30_14200
TRPE
(NRULE_0143)
Anthranilate synthase component ISpopo_31_22330
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSpopo_31_08700
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CSpopo_31_10720
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CSpopo_31_10720
Mercury resistance(NFUNC_0005)
RequireA
MERA
(NRULE_0008)
Mercuric reductaseSpopo_30_01360 Spopo_30_14320
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSpopo_31_16680 Spopo_31_18410 Spopo_31_18370
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSpopo_31_18390 Spopo_31_16650
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSpopo_31_25200
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSpopo_31_18390 Spopo_31_16650
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSpopo_31_18400
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseSpopo_31_16950
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Spopo_31_16950
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDSpopo_31_16930
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseSpopo_31_16960
RIBE
(NRULE_0204)
Riboflavin synthaseSpopo_31_16940
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFSpopo_31_12420
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseSpopo_31_08430
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseSpopo_31_15830
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseSpopo_31_15810
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeSpopo_30_18120 Spopo_31_15840 Spopo_31_11050
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseSpopo_31_11010
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSpopo_31_16220
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSpopo_31_16230

Genomic Overview

BioProject IDPRJNA201105
Locus_tagSpopo
INSDC entriesNZ_AQZX01000000
Sequence statusWGS
Current statusImproved High-Quality Draft
Contig number31
Size(bp) 5,497,153
Gene 5,099
Finishing goalImproved High-Quality Draft
Assembly methodVelvet v. 1.1.05; ALLPATHS v. 39750; Phrap v. 4.24
Coverage
Technology
  • Unknown
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.6 MB 1.5 MB 1.0 MB 491.1 KB