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Microbe : Staphylococcus epidermidis

Microbe Description

NBRC No. 12993
Scientific name Staphylococcus epidermidis
Synonymous name Not assigned
History IFO 12993 <- ATCC 12228 <- FDA PCI 1200
Other culture collection No. ATCC 12228=CIP 68.21=DSM 1798=IAM 12012=NCIB 8853=WHO 12
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseSE_1674
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASE_1608
Aromatic azo compounds degradation(NFUNC_0073)
RequireB
AZR
(NRULE_0237)
NADPH azoreductaseSE_0330
Arsenical resistance(NFUNC_0004)
RequireB
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinSE_0135
ARSC2
(NRULE_0018)
Arsenate reductaseSE_0134
Participant 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseSE_0137
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDSE_0138
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSE_0454
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASE_1608
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseSE_2165
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBSE_0231
Mercury resistance(NFUNC_0005)
RequireA
MERA
(NRULE_0008)
Mercuric reductaseSE_0085
Metal-binding protein(NFUNC_0105)
RequireC
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSE_1852 SE_0075 SE_2398
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSE_2398 SE_0075 SE_1852
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSE_1851
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseSE_2139
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseSE_2141
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseSE_2142 SE_2009
PANC
(NRULE_0118)
Pantothenate synthetaseSE_2140
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASE_1608
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinSE_0224
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinSE_2017 SE_0223 SE_0225 SE_2015
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinSE_2018 SE_0222
C
BCCT
(NRULE_0220)
BCCT family transporterSE_1031 SE_2168 SE_0259
E
OPUE
(NRULE_0222)
Sodium/proline symporterSE_1587
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSE_2262
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSE_2261

Genomic Overview

BioProject IDPRJNA279
Locus_tagSE
INSDC entriesAE015929
Sequence statusComplete
Current status
Contig number7
Size(bp) 2,564,615
Gene 2,485
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228). (Mol Microbiol. 2003) PMID: 12950922

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
770.0 KB 653.2 KB 456.2 KB 182.5 KB