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Microbe : Bacillus subtilis subsp. subtilis

Microbe Description

NBRC No. 13719
Scientific name Bacillus subtilis subsp. subtilis
Synonymous name Bacillus subtilis
History IFO 13719 <- ATCC 6051 <- H.J. Conn, strain Marburg
Other culture collection No. ATCC 6051=ATCC 6051-U=BCRC 10255=CCM 2216=CCRC 10255=CCUG 163B=CFBP 4228=CIP 52.65=DSM 10=IAM 12118=JCM 1465=LMG 7135=NBRC 16412=NCCB 32009=NCCB 53016=NCCB 70064=NCIB 3610=NCIMB 3610=NCTC 3610=NRRL B-4219=NRRL NRS-1315=NRRL NRS-744=VKM B-501
Other No. 1315=744=Marburg=IMET 10758
Reference
8863428
A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae. (Int J Syst Bacteriol. 1996)
10425781
Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov. (Int J Syst Bacteriol. 1999)
14663088
Gradual evolution in bacteria: evidence from Bacillus systematics. (Microbiology. 2003)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseBSU04640 BSU17640
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseBSU21630
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseBSU26790
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABSU18800
Participant 
BLAD
(NRULE_0125)
Beta-lactamase class DBSU02090
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseBSU00750
TRPE
(NRULE_0143)
Anthranilate synthase component IBSU22680
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseBSU40320
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseBSU33540 BSU19230
B
AZR
(NRULE_0237)
NADPH azoreductaseBSU09340
Arsenical resistance(NFUNC_0004)
RequireB
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinBSU05340
ARSC2
(NRULE_0018)
Arsenate reductaseBSU25780
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBBSU25790
ARSC2
(NRULE_0018)
Arsenate reductaseBSU25780
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseBSU31150
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABSU18800
D
BLAD
(NRULE_0125)
Beta-lactamase class DBSU02090
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireB
GBSB
(NRULE_0176)
Alcohol dehydrogenaseBSU31050
BETB
(NRULE_0177)
Betaine aldehyde dehydrogenaseBSU31060
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseBSU30220 BSU17000
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseBSU30230
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDBSU30210
BIOB
(NRULE_0185)
Biotin synthaseBSU30200
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBBSU17840
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseBSU39010
D
ERE
(NRULE_0168)
Erythromycin esteraseBSU02310
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferaseBSU02520
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinBSU32550 BSU38810
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBSU33380
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRBSU24520
Milk clotting(NFUNC_0072)
RequireA
MCP
(NRULE_0235)
Milk-clotting proteaseBSU14700
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBSU33380
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinBSU33390
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseBSU22410
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseBSU22430
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseBSU15110 BSU14440
PANC
(NRULE_0118)
Pantothenate synthetaseBSU22420
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABSU18800
B
BLAD
(NRULE_0125)
Beta-lactamase class DBSU02090
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseBSU18620
Participant 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBSU10390 BSU03290 BSU22560
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseBSU36080 BSU05380
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseBSU19800
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseBSU23260
RIBA
(NRULE_0201)
GTP cyclohydrolase-2BSU23260
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDBSU23280
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseBSU23250
RIBE
(NRULE_0204)
Riboflavin synthaseBSU23270
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFBSU16670
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseBSU26790
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinBSU03000 BSU33710 BSU33810
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinBSU02990 BSU33720 BSU33800 BSU33820 BSU33700
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinBSU33830 BSU02980 BSU33730
C
BCCT
(NRULE_0220)
BCCT family transporterBSU30070
E
OPUE
(NRULE_0222)
Sodium/proline symporterBSU06660 BSU03220
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSBSU00110
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTBSU00120

Genomic Overview

BioProject IDPRJNA76
Locus_tag
INSDC entriesAL009126
Sequence statusComplete
Current status
Contig number1
Size(bp) 4,215,606
Gene 4,185
Finishing goal
Assembly method
Coverage
Technology
Reference
  • From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later. (Microbiology. 2009) PMID: 19383706

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.2 MB 1.1 MB 806.4 KB 377.8 KB