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Microbe : Kribbella flavida

Microbe Description

NBRC No. 14399
Scientific name Kribbella flavida
Synonymous name Not assigned
History IFO 14399 <- IMAS (J.S. Ruan, 65-N86)
Other culture collection No. CIP 107494=DSM 17836=IMSNU 22160=JCM 10339=KACC 20248=KCTC 9580=NCIMB 13631=NRRL B-16234
Other No. 65-N86
Reference
10319498
Classification of 'Nocardioides fulvus' IFO 14399 and Nocardioides sp. ATCC 39419 in Kribbella gen. nov., as Kribbella flavida sp. nov. and Kribbella sandramycini sp. nov. (Int J Syst Bacteriol. 1999)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseKfla_6041
Alginate degradation(NFUNC_0062)
RequireB
ALY
(NRULE_0227)
Alginate lyaseKfla_1504
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseKfla_0261
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseKfla_0087 Kfla_6595 Kfla_4850 Kfla_2389 Kfla_2175 Kfla_0344
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseKfla_3320
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AKfla_4213
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseKfla_4134 Kfla_0059
TRPE
(NRULE_0143)
Anthranilate synthase component IKfla_3062
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseKfla_3134
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseKfla_3811
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AKfla_4213
C
BLAC
(NRULE_0124)
Beta-lactamase class CKfla_0870
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CKfla_0870
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class AKfla_4213
Freeze resistance (by antifreeze protein)(NFUNC_0019)
RequireA
AFP
(NRULE_0089)
Ice-structuring proteinKfla_2946
Kanamycin resistance(NFUNC_0052)
RequireC
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseKfla_3320
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseKfla_1119 Kfla_6966 Kfla_3493
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinKfla_6497 Kfla_6494 Kfla_1064 Kfla_6972
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKfla_5626 Kfla_6495
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRKfla_3638 Kfla_1985 Kfla_1066
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKfla_5626 Kfla_6495
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinKfla_6496
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseKfla_1213
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseKfla_2613
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseKfla_2127 Kfla_1888
PANC
(NRULE_0118)
Pantothenate synthetaseKfla_6447
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AKfla_4213
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseKfla_6868 Kfla_3849
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseKfla_2389 Kfla_0087 Kfla_0344 Kfla_6595 Kfla_4850 Kfla_2175
Participant 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseKfla_3320
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseKfla_0737
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseKfla_0738
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeKfla_4935 Kfla_0736
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseKfla_4951
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseKfla_1215
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseKfla_1220
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterKfla_3665
Vancomycin resistance (via D-Ala-D-Lac precursor)(NFUNC_0089)
RequireA
VANA
(NRULE_0265)
D-alanine--D-lactate ligaseKfla_3620
VANH
(NRULE_0266)
D-specific alpha-keto acid dehydrogenaseKfla_3619
VANX
(NRULE_0267)
D-alanyl-D-alanine dipeptidaseKfla_3621
Participant 
VANR
(NRULE_0284)
Two-component system response regulator VanRKfla_3625
 
VANS
(NRULE_0290)
Two-component system histidine kinase VanSKfla_3624
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSKfla_4427
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTKfla_4409

Genomic Overview

BioProject IDPRJNA21089
Locus_tagKFLA
INSDC entriesCP001736
Sequence statusComplete
Current status
Contig number1
Size(bp) 7,579,488
Gene 6,943
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of Kribbella flavida type strain (IFO 14399). (Stand Genomic Sci. 2010) PMID: 21304701

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.1 MB 1.9 MB 1.4 MB 539.9 KB