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微生物 : Nocardiopsis dassonvillei

微生物株情報

NBRC番号 14626
学名 Nocardiopsis dassonvillei
別名(シノニム) Nocardiopsis alborubida
Nocardiopsis alborubidus (sic)
Nocardiopsis antarctica
Nocardiopsis antarcticus (sic)
Nocardiopsis dassonvillei
由来 IFO 14626 <- IAM (A. Shimazu, AIAM 5062) <- ATCC 23218 <- ? <- P. Thibault
他保存機関番号 ATCC 23218=CCM 2713=CIP 107115=DSM 43111=IFM 0212=JCM 7437=NCTC 10488=NRRL B-5397=VKM Ac-797
他株番号 AIAM 5062=IMRU 509=IMET 9605
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseNdas_5375 Ndas_4045
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseNdas_2382
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseNdas_3033
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseNdas_2219 Ndas_0298 Ndas_1996 Ndas_2104
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2389 Ndas_2388
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseNdas_2111 Ndas_1766
TRPE
(NRULE_0143)
Anthranilate synthase component INdas_1439
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseNdas_5035
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseNdas_4500
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2388 Ndas_2389
C
BLAC
(NRULE_0124)
Beta-lactamase class CNdas_1136
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseNdas_2245 Ndas_0048
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CNdas_1136
任意 
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2388 Ndas_2389
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseNdas_5213
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseNdas_5212
ECTC
(NRULE_0188)
L-ectoine synthaseNdas_5214
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseNdas_0138
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseNdas_5213
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseNdas_5212
 
ECTC
(NRULE_0188)
L-ectoine synthaseNdas_5214
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseNdas_2268
D
ERE
(NRULE_0168)
Erythromycin esteraseNdas_1191 Ndas_1949
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferaseNdas_1658
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseNdas_4408
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinNdas_2560 Ndas_2557
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNdas_2559 Ndas_3813
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRNdas_1966
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNdas_2559 Ndas_3813
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinNdas_2558
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseNdas_1519
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseNdas_3205
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseNdas_4110 Ndas_2408
PANC
(NRULE_0118)
Pantothenate synthetaseNdas_4981
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2388 Ndas_2389
Streptogramin resistance(NFUNC_0027)
必須B
VGB
(NRULE_0114)
Virginiamycin B lyaseNdas_1898
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseNdas_2104 Ndas_0298 Ndas_1996 Ndas_2219
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseNdas_2269
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseNdas_2267
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeNdas_2820
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseNdas_0248
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinNdas_5215
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinNdas_5216
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinNdas_5217
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinNdas_5218
C
BCCT
(NRULE_0220)
BCCT family transporterNdas_4280 Ndas_3576 Ndas_3532 Ndas_2667 Ndas_1904 Ndas_1338
E
OPUE
(NRULE_0222)
Sodium/proline symporterNdas_4604
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSNdas_0823
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTNdas_0824

ゲノム配列情報

BioProject IDPRJNA19709
ローカスタグ
INSDC entriesCP002040, CP002041
ステータスComplete
解析状況
コンティグ数2
サイズ(bp) 6,543,312
遺伝子数 5,497
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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