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Microbe : Nocardiopsis dassonvillei

Microbe Description

NBRC No. 14626
Scientific name Nocardiopsis dassonvillei
Synonymous name Nocardiopsis alborubida
Nocardiopsis alborubidus (sic)
Nocardiopsis antarctica
Nocardiopsis antarcticus (sic)
Nocardiopsis dassonvillei
History IFO 14626 <- IAM (A. Shimazu, AIAM 5062) <- ATCC 23218 <- ? <- P. Thibault
Other culture collection No. ATCC 23218=CCM 2713=CIP 107115=DSM 43111=IFM 0212=JCM 7437=NCTC 10488=NRRL B-5397=VKM Ac-797
Other No. AIAM 5062=IMRU 509=IMET 9605
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseNdas_5375 Ndas_4045
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseNdas_2382
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseNdas_3033
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseNdas_2219 Ndas_0298 Ndas_1996 Ndas_2104
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2389 Ndas_2388
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseNdas_2111 Ndas_1766
TRPE
(NRULE_0143)
Anthranilate synthase component INdas_1439
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseNdas_5035
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseNdas_4500
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2388 Ndas_2389
C
BLAC
(NRULE_0124)
Beta-lactamase class CNdas_1136
Bioplastic degradation(NFUNC_0015)
RequireB
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseNdas_2245 Ndas_0048
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CNdas_1136
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2388 Ndas_2389
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseNdas_5213
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseNdas_5212
ECTC
(NRULE_0188)
L-ectoine synthaseNdas_5214
Hydroxyectoine biosynthesis(NFUNC_0057)
RequireA
ECTD
(NRULE_0189)
Ectoine hydroxylaseNdas_0138
Participant 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseNdas_5213
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseNdas_5212
 
ECTC
(NRULE_0188)
L-ectoine synthaseNdas_5214
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseNdas_2268
D
ERE
(NRULE_0168)
Erythromycin esteraseNdas_1191 Ndas_1949
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferaseNdas_1658
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseNdas_4408
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinNdas_2560 Ndas_2557
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNdas_2559 Ndas_3813
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRNdas_1966
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinNdas_2559 Ndas_3813
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinNdas_2558
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseNdas_1519
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseNdas_3205
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseNdas_4110 Ndas_2408
PANC
(NRULE_0118)
Pantothenate synthetaseNdas_4981
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ANdas_2388 Ndas_2389
Streptogramin resistance(NFUNC_0027)
RequireB
VGB
(NRULE_0114)
Virginiamycin B lyaseNdas_1898
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseNdas_2104 Ndas_0298 Ndas_1996 Ndas_2219
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseNdas_2269
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseNdas_2267
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeNdas_2820
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseNdas_0248
Uptake of osmoprotectant(NFUNC_0061)
RequireB
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinNdas_5215
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinNdas_5216
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinNdas_5217
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinNdas_5218
C
BCCT
(NRULE_0220)
BCCT family transporterNdas_4280 Ndas_3576 Ndas_3532 Ndas_2667 Ndas_1904 Ndas_1338
E
OPUE
(NRULE_0222)
Sodium/proline symporterNdas_4604
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSNdas_0823
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTNdas_0824

Genomic Overview

BioProject IDPRJNA19709
Locus_tag
INSDC entriesCP002040, CP002041
Sequence statusComplete
Current status
Contig number2
Size(bp) 6,543,312
Gene 5,497
Finishing goal
Assembly method
Coverage
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.8 MB 1.6 MB 1.1 MB 432.4 KB