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Microbe : Bacillus amyloliquefaciens

Microbe Description

NBRC No. 15535
Scientific name Bacillus amyloliquefaciens
Synonymous name Not assigned
History IFO 15535 <- ATCC 23350 <- J. Fukumoto, Strain F
Other culture collection No. ATCC 23350=CCUG 28519=CFBP 4246=CIP 103265=DSM 7=HAMBI 1824=LMG 9814=NCAIM B.01704=NRRL B-14393
Other No. F
Reference
4963774
Unrelatedness of Bacillus amyloliquefaciens and Bacillus subtilis. (J Bacteriol. 1967)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseBAMF_0441 BAMF_2325
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseBAMF_0679
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABAMF_1288
Participant 
BLAB
(NRULE_0123)
Metallo-beta-lactamaseBAMF_1259
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseBAMF_0075 BAMF_2478
TRPE
(NRULE_0143)
Anthranilate synthase component IBAMF_2169
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseBAMF_3843
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseBAMF_0457 BAMF_3202 BAMF_1992
B
AZR
(NRULE_0237)
NADPH azoreductaseBAMF_1030
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseBAMF_2916
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABAMF_1288
B
BLAB
(NRULE_0123)
Metallo-beta-lactamaseBAMF_1259
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireB
GBSB
(NRULE_0176)
Alcohol dehydrogenaseBAMF_2871
BETB
(NRULE_0177)
Betaine aldehyde dehydrogenaseBAMF_2872
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseBAMF_1772 BAMF_1922
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseBAMF_1923
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDBAMF_1921
BIOB
(NRULE_0185)
Biotin synthaseBAMF_1920
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBBAMF_1189
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseBAMF_3725
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferaseBAMF_0227
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinBAMF_3050 BAMF_3716
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBAMF_3180
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRBAMF_2355
Milk clotting(NFUNC_0072)
RequireA
MCP
(NRULE_0235)
Milk-clotting proteaseBAMF_1546
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBAMF_3180
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinBAMF_3181
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseBAMF_2141
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseBAMF_2143
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseBAMF_1585 BAMF_1518
PANC
(NRULE_0118)
Pantothenate synthetaseBAMF_2142
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABAMF_1288
Participant 
BLAB
(NRULE_0123)
Metallo-beta-lactamaseBAMF_1259
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseBAMF_0207
Participant 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBAMF_0299 BAMF_2157
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseBAMF_3452
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseBAMF_2062
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseBAMF_2225
RIBA
(NRULE_0201)
GTP cyclohydrolase-2BAMF_2225
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDBAMF_2227
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseBAMF_2224
RIBE
(NRULE_0204)
Riboflavin synthaseBAMF_2226
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFBAMF_1739
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferaseBAMF_0679
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinBAMF_3229 BAMF_0271 BAMF_3234
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinBAMF_3230 BAMF_3233 BAMF_3228 BAMF_3235 BAMF_0270
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinBAMF_3231 BAMF_3236 BAMF_0269
C
BCCT
(NRULE_0220)
BCCT family transporterBAMF_2805
E
OPUE
(NRULE_0222)
Sodium/proline symporterBAMF_0661 BAMF_0295
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSBAMF_0011
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTBAMF_0012

Genomic Overview

BioProject IDPRJEA41719
Locus_tag
INSDC entriesFN597644
Sequence statusComplete
Current status
Contig number1
Size(bp) 3,980,199
Gene 3,893
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons. (Int J Syst Evol Microbiol. 2011) PMID: 20817842

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.2 MB 1.1 MB 760.7 KB 345.8 KB