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Microbe : Vibrio alginolyticus

Microbe Description

NBRC No. 15630
Scientific name Vibrio alginolyticus
Synonymous name Beneckea alginolytica
History IFO 15630 <- Hiroshima Univ. (K. Muroga, HUFP 9107) <- Univ. Tokyo
Other culture collection No. ATCC 17749=CAIM 516=CCUG 13445=CCUG 16315=CCUG 4989=CIP 103336=CIP 75.3=DSM 2171=LMG 4409=NCCB 71013=NCCB 77003=NCIMB 1903=NCTC 12160
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseN646_1828 N646_4376
Alginate degradation(NFUNC_0062)
RequireB
ALY
(NRULE_0227)
Alginate lyaseN646_4465 N646_4461 N646_4462
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AN646_4682
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseN646_1890 N646_1039
TRPE
(NRULE_0143)
Anthranilate synthase component IN646_1038
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseN646_0512
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBN646_4668
ARSC1
(NRULE_0017)
Arsenate reductaseN646_1384
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseN646_2569
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AN646_4682
C
BLAC
(NRULE_0124)
Beta-lactamase class CN646_3968
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseN646_4062
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseN646_3911
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseN646_3908
 
PHAP1
(NRULE_0374)
PhasinN646_3910
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseN646_0165
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseN646_0163
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDN646_0167
BIOB
(NRULE_0185)
Biotin synthaseN646_0164
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CN646_3968
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class AN646_4682
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseN646_0443
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseN646_0442
ECTC
(NRULE_0188)
L-ectoine synthaseN646_0444
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferaseN646_1039 N646_1890
DHPS
(NRULE_0144)
Dihydropteroate synthaseN646_1557
FOLA
(NRULE_0147)
Dihydrofolate reductaseN646_2522
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseN646_2567
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseN646_2568 N646_1600
FOLC
(NRULE_0160)
Bifunctional protein FolCN646_1291
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IN646_0962
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseN646_1127
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseN646_1267
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinN646_3117 N646_4314
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinN646_0668 N646_4316
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRN646_4102
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRN646_3759
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRN646_1982
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRN646_2753
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinN646_0668 N646_4316
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinN646_4315
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinN646_4314
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AN646_4682
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseN646_3859 N646_2834
RIBA
(NRULE_0201)
GTP cyclohydrolase-2N646_1002 N646_3470 N646_2834
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDN646_2832
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseN646_2835
RIBE
(NRULE_0204)
Riboflavin synthaseN646_2833 N646_0537
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFN646_2684
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinN646_0436
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinN646_0437
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinN646_0438 N646_4526 N646_3746
C
BCCT
(NRULE_0220)
BCCT family transporterN646_0441 N646_3148 N646_0986 N646_0516
E
OPUE
(NRULE_0222)
Sodium/proline symporterN646_3435
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseN646_1691
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseN646_1296
SERC
(NRULE_0210)
Phosphoserine aminotransferaseN646_0284
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseN646_2526
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseN646_1662

Genomic Overview

BioProject IDPRJNA184046
Locus_tagG158
INSDC entriesCP006718, CP006719
Sequence statusComplete
Current status
Contig number2
Size(bp) 5,146,637
Gene 4,698
Finishing goal
Assembly methodNewbler v. 2.7
Coverage
Technology
  • 454
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
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FASTA
gz
TSV
uncompressed
1.5 MB 1.3 MB 952.4 KB 351.1 KB