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微生物 : Vibrio tubiashii

微生物株情報

NBRC番号 15644
学名 Vibrio tubiashii
別名（シノニム） 該当データなし
由来 IFO 15644 <- Hiroshima Univ. (K. Muroga, HUFP 9118) <- Univ. Tokyo
他保存機関番号 ATCC 19109=CCUG 38428=CIP 102760=LMG 10936
他株番号 HUFP 9118=CAIM 313
参考文献
該当データなし

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseVITU9109_07921
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseVITU9109_06974
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseVITU9109_06979
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseVITU9109_05805 VITU9109_18348
TRPE
(NRULE_0143)
Anthranilate synthase component IVITU9109_05800
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseVITU9109_15218
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBVITU9109_18850
ARSC1
(NRULE_0017)
Arsenate reductaseVITU9109_23679
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseVITU9109_25810
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseVITU9109_11112
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseVITU9109_01892
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseVITU9109_01907
 
PHAP1
(NRULE_0374)
PhasinVITU9109_01897
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseVITU9109_16348
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseVITU9109_16358
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDVITU9109_16338
BIOB
(NRULE_0185)
Biotin synthaseVITU9109_16353
Chloramphenicol resistance(NFUNC_0025)
必須B
CAT4
(NRULE_0108)
Chloramphenicol acetyltransferaseVITU9109_06095
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseVITU9109_24625
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseVITU9109_24620
ECTC
(NRULE_0188)
L-ectoine synthaseVITU9109_24630
Folate biosynthesis(NFUNC_0044)
必須B
GLAT
(NRULE_0142)
Glutamine amidotransferaseVITU9109_05805 VITU9109_18348
DHPS
(NRULE_0144)
Dihydropteroate synthaseVITU9109_26230 VITU9109_06924
FOLA
(NRULE_0147)
Dihydrofolate reductaseVITU9109_25650
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseVITU9109_25800
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseVITU9109_25805 VITU9109_26015
FOLC
(NRULE_0160)
Bifunctional protein FolCVITU9109_22965
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IVITU9109_22341
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseVITU9109_01042
Fosfomycin resistance(NFUNC_0023)
必須A
FOSA
(NRULE_0098)
Glutathione transferase FosAVITU9109_04037
Kanamycin resistance(NFUNC_0052)
必須C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseVITU9109_06979
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseVITU9109_04522
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinVITU9109_19130 VITU9109_10042
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVITU9109_08577 VITU9109_15958 VITU9109_19140
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRVITU9109_00400
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRVITU9109_14918
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRVITU9109_13247
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRVITU9109_21719
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVITU9109_19140 VITU9109_15958 VITU9109_08577
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinVITU9109_19135
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinVITU9109_19130
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseVITU9109_05241 VITU9109_06220
RIBA
(NRULE_0201)
GTP cyclohydrolase-2VITU9109_06220 VITU9109_22396
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDVITU9109_06230
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseVITU9109_06215
RIBE
(NRULE_0204)
Riboflavin synthaseVITU9109_06225 VITU9109_11067
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFVITU9109_21494
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseVITU9109_06974
任意 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseVITU9109_06979
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterVITU9109_08962 VITU9109_09602 VITU9109_04507
E
OPUE
(NRULE_0222)
Sodium/proline symporterVITU9109_07383
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseVITU9109_25515
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseVITU9109_12633
SERC
(NRULE_0210)
Phosphoserine aminotransferaseVITU9109_23420
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseVITU9109_25675
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseVITU9109_03595

ゲノム配列情報

BioProject IDPRJNA68625
ローカスタグ
INSDC entriesAFWI01000000
ステータスWGS
解析状況
コンティグ数226
サイズ(bp) 5,467,464
遺伝子数 5,201
フィニッシングゴール
アセンブル方法Newbler v. 2.5
冗長度20x
シーケンス方法
  • 454 FLX Titanium
参考文献
  • Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea. (Int J Syst Evol Microbiol. 2012) PMID: 21930677

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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