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微生物 : Vibrio ichthyoenteri

微生物株情報

NBRC番号 15847
学名 Vibrio ichthyoenteri
別名（シノニム） 該当データなし
由来 IFO 15847 <- Hiroshima Univ. (K. Muroga, F-2)
他保存機関番号 ATCC 700023=CAIM 597=CIP 104815=DSM 14397=LMG 19664
他株番号 F-2
参考文献
該当データなし

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseVII00023_20045
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseVII00023_09194 VII00023_04647
TRPE
(NRULE_0143)
Anthranilate synthase component IVII00023_09199
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBVII00023_16295
ARSC1
(NRULE_0017)
Arsenate reductaseVII00023_16711
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseVII00023_12606
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseVII00023_20252
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseVII00023_20232
 
PHAP1
(NRULE_0374)
PhasinVII00023_20242
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseVII00023_15126
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseVII00023_15116
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDVII00023_15136
BIOB
(NRULE_0185)
Biotin synthaseVII00023_15121
Chloramphenicol resistance(NFUNC_0025)
必須A
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseVII00023_17984
B
CAT4
(NRULE_0108)
Chloramphenicol acetyltransferaseVII00023_18109
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseVII00023_05507
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseVII00023_05502
ECTC
(NRULE_0188)
L-ectoine synthaseVII00023_05512
Folate biosynthesis(NFUNC_0044)
必須B
GLAT
(NRULE_0142)
Glutamine amidotransferaseVII00023_04647 VII00023_09194
DHPS
(NRULE_0144)
Dihydropteroate synthaseVII00023_04068
FOLA
(NRULE_0147)
Dihydrofolate reductaseVII00023_17071
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseVII00023_12616
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseVII00023_12611 VII00023_21477
FOLC
(NRULE_0160)
Bifunctional protein FolCVII00023_13427
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IVII00023_07094
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseVII00023_22004
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseVII00023_12743
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseVII00023_19264
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinVII00023_20477
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVII00023_02194 VII00023_20467 VII00023_03688 VII00023_16475
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRVII00023_11961
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRVII00023_15603
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinVII00023_03688 VII00023_20467 VII00023_02194 VII00023_16475
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinVII00023_20472
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinVII00023_20477
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseVII00023_22301 VII00023_02609
RIBA
(NRULE_0201)
GTP cyclohydrolase-2VII00023_02609 VII00023_07144
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDVII00023_02619
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseVII00023_02604
RIBE
(NRULE_0204)
Riboflavin synthaseVII00023_10894 VII00023_02614
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFVII00023_03913
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinVII00023_05487
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinVII00023_05492
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinVII00023_05497 VII00023_15326
C
BCCT
(NRULE_0220)
BCCT family transporterVII00023_07814 VII00023_17234 VII00023_19249
E
OPUE
(NRULE_0222)
Sodium/proline symporterVII00023_14072
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseVII00023_13127
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseVII00023_13402
SERC
(NRULE_0210)
Phosphoserine aminotransferaseVII00023_21242
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseVII00023_17091
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseVII00023_14705

ゲノム配列情報

BioProject IDPRJNA51217
ローカスタグ
INSDC entriesAFWF01000000
ステータスWGS
解析状況
コンティグ数326
サイズ(bp) 4,641,086
遺伝子数 4,502
フィニッシングゴール
アセンブル方法Newbler v. 2.5
冗長度20x
シーケンス方法
  • 454 FLX Titanium
参考文献
  • Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea. (Int J Syst Evol Microbiol. 2012) PMID: 21930677

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
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