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Microbe : Micromonospora aurantiaca

Microbe Description

NBRC No. 16155
Scientific name Micromonospora aurantiaca
Synonymous name Not assigned
History IFO 16155 <- VKM Ac-1936 <- INA 9442
Other culture collection No. ATCC 27029=CBS 129.76=DSM 43813=JCM 10878=NBRC 16125=NRRL B-16091=VKM Ac-1936
Other No. INA 9442
Reference
5396594
[Species of the genus Micromonospora Oerskov, 1923 and their taxonomy]. (Mikrobiologiia. 1969)
10826795
Intrageneric relationships among Micromonospora species deduced from gyrB-based phylogeny and DNA relatedness. (Int J Syst Evol Microbiol. 2000)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseMicau_5449
n-alkane hydroxylation(NFUNC_0008)
RequireB
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseMicau_3940
Participant 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinMicau_4316 Micau_4344 Micau_4014 Micau_1415 Micau_0250 Micau_4564
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseMicau_5995 Micau_4767
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireC
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseMicau_5230
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseMicau_5195
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AMicau_2858
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseMicau_0102 Micau_2588
TRPE
(NRULE_0143)
Anthranilate synthase component IMicau_4427
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseMicau_0650
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseMicau_2912
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AMicau_2858
Bioplastic degradation(NFUNC_0015)
RequireB
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseMicau_2972 Micau_3729 Micau_4610
Gentamicin resistance(NFUNC_0053)
RequireA
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseMicau_5230
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseMicau_5995 Micau_4767
Kanamycin resistance(NFUNC_0052)
RequireB
ANT2
(NRULE_0153)
2''-aminoglycoside nucleotidyltransferaseMicau_5230
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseMicau_4767 Micau_5995
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseMicau_0781
D
ERE
(NRULE_0168)
Erythromycin esteraseMicau_5176
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseMicau_3159
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinMicau_5803 Micau_3787 Micau_3620 Micau_3617
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMicau_0769 Micau_3619
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRMicau_6159
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMicau_3619 Micau_0769
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinMicau_3618
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseMicau_5857
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseMicau_4637
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseMicau_0846
PANC
(NRULE_0118)
Pantothenate synthetaseMicau_5858
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AMicau_2858
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseMicau_2359
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Micau_2359 Micau_3610
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDMicau_2356
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseMicau_2360
RIBE
(NRULE_0204)
Riboflavin synthaseMicau_2357
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFMicau_1481
Streptogramin resistance(NFUNC_0027)
RequireB
VGB
(NRULE_0114)
Virginiamycin B lyaseMicau_4629
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseMicau_5195
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseMicau_2850
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseMicau_2851
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeMicau_2849
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseMicau_4541 Micau_4956
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseMicau_0858 Micau_4957
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterMicau_4808
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSMicau_2259
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTMicau_2260

Genomic Overview

BioProject IDPRJNA37957
Locus_tagMICAU
INSDC entriesCP002162
Sequence statusComplete
Current statusFinished
Contig number1
Size(bp) 7,025,559
Gene 6,222
Finishing goalFinished
Assembly methodNewbler v. 2.3
Coverage
Technology
  • 454
  • Illumina
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
2.0 MB 1.8 MB 1.3 MB 475.4 KB