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微生物 : Gordonia otitidis

微生物株情報

NBRC番号 100426
学名 Gordonia otitidis
別名(シノニム) 該当データなし
由来 Chiba Univ. (Y. Mikami, IFM 10032)
他保存機関番号 IFM 10032=DSM 44809=JCM 12355=CCUG 52243=CIP 109016
他株番号
参考文献
16166681
Gordonia otitidis sp. nov., isolated from a patient with external otitis. (Int J Syst Evol Microbiol. 2005)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOOTI_028_00020
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOOTI_008_00100
任意 
RUBA
(NRULE_0039)
RubredoxinGOOTI_008_00100
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOOTI_065_01200 GOOTI_035_00300 GOOTI_035_00270 GOOTI_192_00370 GOOTI_248_00120 GOOTI_153_00110 GOOTI_125_00110 GOOTI_091_00590
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOOTI_231_00030 GOOTI_118_00140
ARSC1
(NRULE_0017)
Arsenate reductaseGOOTI_252_00060
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOOTI_217_00310 GOOTI_033_00040
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGOOTI_238_00260
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOOTI_217_00420
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOOTI_217_00430
ECTC
(NRULE_0188)
L-ectoine synthaseGOOTI_217_00410
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOOTI_102_00020
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGOOTI_127_00030
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOOTI_217_00420
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOOTI_217_00430
 
ECTC
(NRULE_0188)
L-ectoine synthaseGOOTI_217_00410
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOOTI_115_00080
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGOOTI_191_00080
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOOTI_096_00110 GOOTI_120_00040 GOOTI_096_00080 GOOTI_182_00740
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOOTI_183_00050 GOOTI_096_00090
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOOTI_268_00070
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOOTI_096_00090 GOOTI_183_00050
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOOTI_096_00100
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseGOOTI_012_00160
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseGOOTI_065_00850
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseGOOTI_128_00080
PANC
(NRULE_0118)
Pantothenate synthetaseGOOTI_012_00170
Phenol degradation(NFUNC_0028)
必須C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseGOOTI_109_00280
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOOTI_129_00080 GOOTI_005_00280
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOOTI_153_00040 GOOTI_091_00530 GOOTI_112_00220 GOOTI_031_00040 GOOTI_244_00050 GOOTI_031_00210 GOOTI_005_00610 GOOTI_112_00040 GOOTI_244_00070 GOOTI_125_00120 GOOTI_069_00090 GOOTI_082_00500
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOOTI_091_00590 GOOTI_248_00120 GOOTI_192_00370 GOOTI_153_00110 GOOTI_125_00110 GOOTI_065_01200 GOOTI_035_00300 GOOTI_035_00270
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOOTI_004_00190 GOOTI_056_00070 GOOTI_136_00120 GOOTI_192_00340 GOOTI_256_00480
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOOTI_099_00110
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOOTI_099_00210
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOOTI_065_00610 GOOTI_099_00100
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOOTI_130_00600
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOOTI_130_00590
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOOTI_238_00290
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOOTI_135_00070
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOOTI_135_00120

ゲノム配列情報

BioProject IDPRJDB3
ローカスタグGOOTI
INSDC entriesBAFB00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数273
サイズ(bp) 5,295,895
遺伝子数 4,943
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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