English site

微生物 : Rubrobacter xylanophilus

微生物株情報

NBRC番号 100952
学名 Rubrobacter xylanophilus
別名(シノニム) 該当データなし
由来 JCM 11954 <- CIP 105412 <- F. Nobre, PRD-1
他保存機関番号 CIP 105412=DSM 9941=JCM 11954=NBRC 16129
他株番号 PRD-1
参考文献
該当データなし

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseRxyl_0804
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseRxyl_1680
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseRxyl_2074
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRxyl_2096
TRPE
(NRULE_0143)
Anthranilate synthase component IRxyl_2115
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseRxyl_1270
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRxyl_1243
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRxyl_2386
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseRxyl_1767
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRxyl_3207 Rxyl_2912 Rxyl_2068 Rxyl_1173
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRxyl_2650 Rxyl_0958 Rxyl_1175
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRxyl_2650 Rxyl_1175 Rxyl_0958
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRxyl_2651
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseRxyl_1857
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseRxyl_0473
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseRxyl_2822
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRxyl_0534 Rxyl_0885 Rxyl_1560 Rxyl_2712 Rxyl_2821 Rxyl_2871 Rxyl_2958 Rxyl_0085 Rxyl_0167
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRxyl_1858 Rxyl_1253 Rxyl_1781 Rxyl_0953
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseRxyl_2074
Trehalose biosynthesis (from D-glucose and ADP-glucose)(NFUNC_0032)
必須A
TRET
(NRULE_0121)
Trehalose synthaseRxyl_3082 Rxyl_2973
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseRxyl_0319
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseRxyl_0318
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRxyl_0317
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseRxyl_0315
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterRxyl_0757
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSRxyl_1316
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTRxyl_1317

ゲノム配列情報

BioProject IDPRJNA10670
ローカスタグRXYL
INSDC entriesCP000386
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 3,225,748
遺伝子数 3,140
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
939.4 KB 866.6 KB 624.2 KB 245.7 KB