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Microbe : Bacillus psychrosaccharolyticus

Microbe Description

NBRC No. 101233
Scientific name Bacillus psychrosaccharolyticus
Synonymous name Not assigned
History NRRL NRS-1518 <- N.R. Smith Collection <- J.L. Stokes, T25B
Other culture collection No. ATCC 23296=CCUG 28882=CIP 106932=DSM 13778=DSM 6=LMG 9580=NCIB 11729=NCIMB 11729=NRRL B-3394=NRRL NRS-1518
Other No. T25B
Reference
6051360
Taxonomy of psychrophilic strains of Bacillus. (J Bacteriol. 1967)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseWYK_160_00150
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseWYK_231_00100
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseWYK_184_00300
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AWYK_252_00110
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseWYK_174_00060
TRPE
(NRULE_0143)
Anthranilate synthase component IWYK_174_00070
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseWYK_265_00010
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseWYK_237_00070 WYK_184_00400
Arsenical resistance(NFUNC_0004)
RequireB
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinWYK_253_00100
ARSC2
(NRULE_0018)
Arsenate reductaseWYK_198_00160
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseWYK_200_00030 WYK_163_00160
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AWYK_252_00110
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBWYK_032_00110
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinWYK_001_00070
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinWYK_153_00460 WYK_005_00260
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRWYK_196_00240
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinWYK_005_00260 WYK_153_00460
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinWYK_005_00250
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseWYK_249_00350
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseWYK_249_00370
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseWYK_192_00090 WYK_252_00090 WYK_185_00020
PANC
(NRULE_0118)
Pantothenate synthetaseWYK_249_00360
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AWYK_252_00110
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseWYK_156_00320
Participant 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinWYK_185_00110 WYK_249_00510 WYK_193_00140
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseWYK_057_00040 WYK_156_00340 WYK_261_00280
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseWYK_005_00060
RIBA
(NRULE_0201)
GTP cyclohydrolase-2WYK_005_00060
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDWYK_005_00080
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseWYK_005_00050
RIBE
(NRULE_0204)
Riboflavin synthaseWYK_005_00070
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFWYK_199_00110
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseWYK_184_00300
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinWYK_003_00350
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinWYK_221_00700 WYK_221_00720 WYK_003_00350
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinWYK_003_00340 WYK_233_00220 WYK_221_00690
E
OPUE
(NRULE_0222)
Sodium/proline symporterWYK_208_00070
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSWYK_221_00370
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTWYK_221_00380

Genomic Overview

BioProject IDPRJNA159255
Locus_tagWYK
INSDC entriesAJTN02000000
Sequence statusWGS
Current status
Contig number265
Size(bp) 4,590,454
Gene 0
Finishing goal
Assembly methodNewbler v. 2.6
Coverage187.0x
Technology
  • 454
  • Illumina MiSeq
Reference
  • Genome of the Psychrophilic Bacterium Bacillus psychrosaccharolyticus, a Potential Source of 2'-Deoxyribosyltransferase for Industrial Nucleoside Synthesis. (Genome Announc. 2013) PMID: 23723405

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
uncompressed
1.4 MB 1.3 MB 843.1 KB 382.8 KB