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Microbe : Marinomonas mediterranea

Microbe Description

NBRC No. 103028
Scientific name Marinomonas mediterranea
Synonymous name Not assigned
History IAM 14944 <- ATCC 700492 <- Univ. Murcia (A. Sanchez-Amat, MMB-1) <- M. Jansa
Other culture collection No. ATCC 700492=CECT 4803=CIP 106128=IAM 14944=JCM 21426=NCIMB 13598
Other No. MMB-1
Reference
10425786
Studies on the phylogenetic relationships of melanogenic marine bacteria: proposal of Marinomonas mediterranea sp. nov. (Int J Syst Bacteriol. 1999)
16535688
Isolation and Characterization of Strain MMB-1 (CECT 4803), a Novel Melanogenic Marine Bacterium. (Appl Environ Microbiol. 1997)

Functional Potential >>Details

Download
TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseMarme_0749 Marme_0084
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseMarme_2372 Marme_0594
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseMarme_1127
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
RequireA
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitMarme_1561
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitMarme_1560
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseMarme_1558
Participant 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentMarme_1559
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentMarme_1559 Marme_1745 Marme_2403 Marme_2585
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinMarme_1172 Marme_3617 Marme_2406 Marme_2404 Marme_2221 Marme_1796 Marme_1744 Marme_1561
 
FDR2
(NRULE_0057)
Ferredoxin reductaseMarme_4085
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseMarme_0467
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseMarme_3250
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseMarme_3253
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDMarme_3247
BIOB
(NRULE_0185)
Biotin synthaseMarme_3251
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseMarme_1546
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseMarme_1547
ECTC
(NRULE_0188)
L-ectoine synthaseMarme_1545
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferaseMarme_1027 Marme_3564
DHPS
(NRULE_0144)
Dihydropteroate synthaseMarme_0973
FOLA
(NRULE_0147)
Dihydrofolate reductaseMarme_0712
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseMarme_2591 Marme_1013
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseMarme_3608
FOLC
(NRULE_0160)
Bifunctional protein FolCMarme_2076
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IMarme_3079
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseMarme_2294
Fosfomycin resistance(NFUNC_0023)
RequireA
FOSA
(NRULE_0098)
Glutathione transferase FosAMarme_2376
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseMarme_2493
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinMarme_0526 Marme_0330 Marme_0946
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMarme_4129 Marme_4040 Marme_1625 Marme_0944
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRMarme_0138
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRMarme_1209
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinMarme_4129 Marme_0944 Marme_1625 Marme_4040
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinMarme_0945
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinMarme_0946
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseMarme_1134
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseMarme_3609
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseMarme_2063 Marme_3625
PANC
(NRULE_0118)
Pantothenate synthetaseMarme_3610
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseMarme_3768
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseMarme_0499
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Marme_0499 Marme_2059
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDMarme_0498
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseMarme_1272 Marme_0500
RIBE
(NRULE_0204)
Riboflavin synthaseMarme_1111
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFMarme_0296
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterMarme_4033 Marme_2353
E
OPUE
(NRULE_0222)
Sodium/proline symporterMarme_3415

Genomic Overview

BioProject IDPRJNA51765
Locus_tag
INSDC entriesCP002583
Sequence statusComplete
Current statusFinished
Contig number1
Size(bp) 4,684,316
Gene 4,121
Finishing goalFinished
Assembly methodNewbler v. 2.3
Coverage
Technology
  • 454
  • Illumina
Reference
  • Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1(T)). (Stand Genomic Sci. 2012) PMID: 22675599

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.4 MB 1.2 MB 878.5 KB 328.9 KB