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微生物 : Edwardsiella tarda

微生物株情報

NBRC番号 105688
学名 Edwardsiella tarda
別名（シノニム） Edwardsiella anguillimortifera
由来 GTC 00112 <- GIFU 2929 <- NCTC 10396 <- K.P. Carpenter <- CDC (W. Ewing, CDC 1483-59) <- Kentucky State Health Dept., K349
他保存機関番号 ATCC 15947=CIP 78.61=DSM 30052=GTC 00112=GIFU 2929=BCRC 10670=CCUG 1638=NCTC 10396=JCM 1656=ATCC 23656=CCM 2238=CECT 849=LMG 2793
他株番号 CDC 1483-59=K349=82051=4.78=123=FIRDI 670
参考文献
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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseET1_23_00150
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseET1_04_00340 ET1_26_00280
TRPE
(NRULE_0143)
Anthranilate synthase component IET1_04_00350
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBET1_07_00210
ARSC1
(NRULE_0017)
Arsenate reductaseET1_19_00490 ET1_03_01530
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBET1_07_00210
ARSC2
(NRULE_0018)
Arsenate reductaseET1_07_00240
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseET1_14_00280
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CET1_15_00010
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseET1_08_00180
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseET1_08_00160
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDET1_05_02380 ET1_08_00200
BIOB
(NRULE_0185)
Biotin synthaseET1_08_00170
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CET1_15_00010
Folate biosynthesis(NFUNC_0044)
必須B
GLAT
(NRULE_0142)
Glutamine amidotransferaseET1_26_00280 ET1_04_00340
DHPS
(NRULE_0144)
Dihydropteroate synthaseET1_14_01240
FOLA
(NRULE_0147)
Dihydrofolate reductaseET1_10_00390
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseET1_14_00290 ET1_09_00190
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseET1_10_01220
FOLC
(NRULE_0160)
Bifunctional protein FolCET1_09_00120
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IET1_05_01450
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseET1_06_00300
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseET1_16_01030
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseET1_04_00550
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinET1_08_00090 ET1_20_00560 ET1_08_00140
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorET1_08_00090
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinET1_06_02020 ET1_20_00380 ET1_08_00120
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRET1_19_00920
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRET1_28_00140
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRET1_14_02460
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRET1_12_00130
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinET1_20_00380 ET1_06_02020 ET1_08_00120
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorET1_08_00090
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinET1_08_00130
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinET1_08_00140
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseET1_10_01190
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseET1_10_01210
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseET1_20_00910
PANC
(NRULE_0118)
Pantothenate synthetaseET1_10_01200
Phytic acid hydrolysis(NFUNC_0085)
必須B
APPA
(NRULE_0259)
Periplasmic AppA proteinET1_03_00060
Polymyxin resistance(NFUNC_0036)
必須A
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAET1_02_00790
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferaseET1_02_00770
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferaseET1_02_00780
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDET1_02_00800
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEET1_02_00820
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFET1_02_00830
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferaseET1_02_00810
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseET1_14_00160
RIBA
(NRULE_0201)
GTP cyclohydrolase-2ET1_06_00370
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDET1_20_00760
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseET1_20_00770
RIBE
(NRULE_0204)
Riboflavin synthaseET1_05_00020
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFET1_10_00250
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterET1_05_01610 ET1_12_01550
E
OPUE
(NRULE_0222)
Sodium/proline symporterET1_07_01270 ET1_14_01060
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseET1_16_00160
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseET1_09_00070
SERC
(NRULE_0210)
Phosphoserine aminotransferaseET1_21_00680
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseET1_10_00430
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseET1_12_00960

ゲノム配列情報

BioProject IDPRJDB227
ローカスタグET1
INSDC entriesBANW00000000
ステータスWGS
解析状況HIGH_QUALITY_DRAFT
コンティグ数34
サイズ(bp) 3,610,384
遺伝子数 3,257
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.1 MB 1007.2 KB 671.5 KB 246.6 KB