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Microbe : Rahnella aquatilis

Microbe Description

NBRC No. 105701
Scientific name Rahnella aquatilis
Synonymous name Not assigned
History GTC 00341 <- GIFU 10606 <- ATCC 33071 <- H. Leclerc, 133
Other culture collection No. ATCC 33071=BCRC 14814=CCUG 14185=CIP 78.65=DSM 4594=GIFU 10606=GTC 00341=HAMBI 1280=JCM 1683=LMG 2794=LMG 7880=NCIMB 13365
Other No. 133=82078=266=CUETM 77-115
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseRahaq2_4189 Rahaq2_2166
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseRahaq2_0302 Rahaq2_2058
TRPE
(NRULE_0143)
Anthranilate synthase component IRahaq2_2059
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRahaq2_2249
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinRahaq2_4921
ARSC1
(NRULE_0017)
Arsenate reductaseRahaq2_4920 Rahaq2_3345
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRahaq2_0639
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseRahaq2_1449
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseRahaq2_3123
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseRahaq2_3125
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDRahaq2_3121 Rahaq2_2438
BIOB
(NRULE_0185)
Biotin synthaseRahaq2_3124
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferaseRahaq2_0302 Rahaq2_2058
DHPS
(NRULE_0144)
Dihydropteroate synthaseRahaq2_0507
FOLA
(NRULE_0147)
Dihydrofolate reductaseRahaq2_3864
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseRahaq2_0638
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseRahaq2_3753
FOLC
(NRULE_0160)
Bifunctional protein FolCRahaq2_1305
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IRahaq2_2917
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseRahaq2_2974
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseRahaq2_2927
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRahaq2_0594 Rahaq2_1649 Rahaq2_3141 Rahaq2_3145
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRahaq2_3145
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRahaq2_4443 Rahaq2_1167 Rahaq2_1627 Rahaq2_2316 Rahaq2_2434 Rahaq2_3143 Rahaq2_4149
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRahaq2_3374
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRRahaq2_0389
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRRahaq2_1104
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRahaq2_2434 Rahaq2_3143 Rahaq2_4149 Rahaq2_4443 Rahaq2_1167 Rahaq2_1627 Rahaq2_2316
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorRahaq2_3145
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRahaq2_3142
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinRahaq2_3141
Nitrogenase(NFUNC_0094)
RequireA
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainRahaq2_5110
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainRahaq2_5109
VNFH
(NRULE_0353)
Nitrogenase reductaseRahaq2_5111
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseRahaq2_3758
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseRahaq2_3756
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseRahaq2_3443 Rahaq2_4643 Rahaq2_4736
PANC
(NRULE_0118)
Pantothenate synthetaseRahaq2_3757
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseRahaq2_4823
Participant 
PQQA
(NRULE_0090)
Coenzyme PQQ synthesis protein ARahaq2_4825
 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BRahaq2_4824
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein DRahaq2_4822
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ERahaq2_4821
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein FRahaq2_4820
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseRahaq2_0647
RIBA
(NRULE_0201)
GTP cyclohydrolase-2Rahaq2_2075
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDRahaq2_3456
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseRahaq2_3455
RIBE
(NRULE_0204)
Riboflavin synthaseRahaq2_2818
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFRahaq2_3881
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseRahaq2_4842
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseRahaq2_4843
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRahaq2_0227 Rahaq2_2353
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRahaq2_4935
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRahaq2_4936
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinRahaq2_0790 Rahaq2_0789
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinRahaq2_0791
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinRahaq2_0792
C
BCCT
(NRULE_0220)
BCCT family transporterRahaq2_1446
D
PROP
(NRULE_0221)
Osmoprotectant transporterRahaq2_4966
E
OPUE
(NRULE_0222)
Sodium/proline symporterRahaq2_2523
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseRahaq2_3600
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseRahaq2_1300
SERC
(NRULE_0210)
Phosphoserine aminotransferaseRahaq2_3295 Rahaq2_1562
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseRahaq2_3860
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseRahaq2_3509

Genomic Overview

BioProject IDPRJNA60227
Locus_tag
INSDC entriesCP003244
Sequence statusComplete
Current statusFinished
Contig number4
Size(bp) 5,448,900
Gene 4,866
Finishing goalFinished
Assembly methodNewbler v. 2.3
Coverage
Technology
  • 454
  • Illumina
Reference
  • Complete genome sequence of Rahnella aquatilis CIP 78.65. (J Bacteriol. 2012) PMID: 22582378

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
uncompressed
1.6 MB 1.4 MB 1.0 MB 421.4 KB