Alanine racemization(NFUNC_0063) |
必須 | A | ALR (NRULE_0228) | Alanine racemase | Rahaq2_4189 Rahaq2_2166 |
Anthranilate biosynthesis(NFUNC_0038) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | Rahaq2_0302 Rahaq2_2058 |
TRPE (NRULE_0143) | Anthranilate synthase component I | Rahaq2_2059 |
Aromatic azo compounds degradation(NFUNC_0073) |
必須 | A | AZOR (NRULE_0236) | FMN-dependent NADH-azoreductase | Rahaq2_2249 |
Arsenical resistance(NFUNC_0004) |
必須 | A | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | Rahaq2_4921 |
ARSC1 (NRULE_0017) | Arsenate reductase | Rahaq2_4920 Rahaq2_3345 |
Bacitracin resistance(NFUNC_0022) |
必須 | A | UPPP (NRULE_0097) | Undecaprenyl-diphosphatase | Rahaq2_0639 |
Betaine biosynthesis (from choline)(NFUNC_0049) |
必須 | A | BETA (NRULE_0175) | Choline dehydrogenase | Rahaq2_1449 |
Biotin biosynthesis(NFUNC_0051) |
必須 | A | BIOF (NRULE_0182) | 8-amino-7-oxononanoate synthase | Rahaq2_3123 |
BIOA (NRULE_0183) | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | Rahaq2_3125 |
BIOD (NRULE_0184) | ATP-dependent dethiobiotin synthetase BioD | Rahaq2_3121 Rahaq2_2438 |
BIOB (NRULE_0185) | Biotin synthase | Rahaq2_3124 |
Folate biosynthesis(NFUNC_0044) |
必須 | B | GLAT (NRULE_0142) | Glutamine amidotransferase | Rahaq2_0302 Rahaq2_2058 |
DHPS (NRULE_0144) | Dihydropteroate synthase | Rahaq2_0507 |
FOLA (NRULE_0147) | Dihydrofolate reductase | Rahaq2_3864 |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | Rahaq2_0638 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | Rahaq2_3753 |
FOLC (NRULE_0160) | Bifunctional protein FolC | Rahaq2_1305 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | Rahaq2_2917 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | Rahaq2_2974 |
Macrolide antibiotic resistance(NFUNC_0045) |
必須 | B | RLMA (NRULE_0165) | 23S rRNA (guanine-N(1))-methyltransferase | Rahaq2_2927 |
Metal-binding protein(NFUNC_0105) |
必須 | A | MOP (NRULE_0322) | Putative molybdenum-binding protein | Rahaq2_0594 Rahaq2_1649 Rahaq2_3141 Rahaq2_3145 |
B | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | Rahaq2_3145 |
C | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | Rahaq2_4443 Rahaq2_1167 Rahaq2_1627 Rahaq2_2316 Rahaq2_2434 Rahaq2_3143 Rahaq2_4149 |
E | CUER (NRULE_0328) | Copper-responsive transcriptional regulator CueR | Rahaq2_3374 |
G | ZNTR (NRULE_0330) | Zinc-responsive transcriptional regulator ZntR | Rahaq2_0389 |
I | ISCR (NRULE_0332) | Rrf2 family transcriptional regulator IscR | Rahaq2_1104 |
Molybdate transport (ABC transporter)(NFUNC_0097) |
必須 | A | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | Rahaq2_2434 Rahaq2_3143 Rahaq2_4149 Rahaq2_4443 Rahaq2_1167 Rahaq2_1627 Rahaq2_2316 |
任意 | | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | Rahaq2_3145 |
| MODB (NRULE_0325) | Molybdate ABC transporter permease protein | Rahaq2_3142 |
| MODC (NRULE_0326) | Molybdate ABC transporter ATP-binding protein | Rahaq2_3141 |
Nitrogenase(NFUNC_0094) |
必須 | A | NIFD (NRULE_0347) | Nitrogenase molybdenum-iron protein alpha chain | Rahaq2_5110 |
NIFK (NRULE_0348) | Nitrogenase molybdenum-iron protein beta chain | Rahaq2_5109 |
VNFH (NRULE_0353) | Nitrogenase reductase | Rahaq2_5111 |
(R)-pantothenate biosynthesis(NFUNC_0030) |
必須 | A | PAND (NRULE_0115) | Aspartate 1-decarboxylase | Rahaq2_3758 |
PANB (NRULE_0116) | 3-methyl-2-oxobutanoate hydroxymethyltransferase | Rahaq2_3756 |
PANE (NRULE_0117) | 2-dehydropantoate 2-reductase | Rahaq2_3443 Rahaq2_4643 Rahaq2_4736 |
PANC (NRULE_0118) | Pantothenate synthetase | Rahaq2_3757 |
Pyrroloquinoline quinone biosynthesis(NFUNC_0020) |
必須 | A | PQQC (NRULE_0092) | Pyrroloquinoline-quinone synthase | Rahaq2_4823 |
任意 | | PQQA (NRULE_0090) | Coenzyme PQQ synthesis protein A | Rahaq2_4825 |
| PQQB (NRULE_0091) | Coenzyme PQQ synthesis protein B | Rahaq2_4824 |
| PQQD (NRULE_0093) | Coenzyme PQQ synthesis protein D | Rahaq2_4822 |
| PQQE (NRULE_0094) | Coenzyme PQQ synthesis protein E | Rahaq2_4821 |
| PQQF (NRULE_0095) | Coenzyme PQQ synthesis protein F | Rahaq2_4820 |
Riboflavin biosynthesis(NFUNC_0058) |
必須 | A | RIBB (NRULE_0200) | 3,4-dihydroxy-2-butanone 4-phosphate synthase | Rahaq2_0647 |
RIBA (NRULE_0201) | GTP cyclohydrolase-2 | Rahaq2_2075 |
RIBD (NRULE_0202) | Riboflavin biosynthesis protein RibD | Rahaq2_3456 |
RIBH (NRULE_0203) | 6,7-dimethyl-8-ribityllumazine synthase | Rahaq2_3455 |
RIBE (NRULE_0204) | Riboflavin synthase | Rahaq2_2818 |
任意 | | RIBF (NRULE_0205) | Riboflavin biosynthesis protein RibF | Rahaq2_3881 |
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037) |
必須 | A | TREY (NRULE_0140) | Maltooligosyl trehalose synthase | Rahaq2_4842 |
TREZ (NRULE_0141) | Malto-oligosyltrehalose trehalohydrolase | Rahaq2_4843 |
任意 | | GLGX (NRULE_0139) | Glycogen debranching enzyme | Rahaq2_0227 Rahaq2_2353 |
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031) |
必須 | A | TPS (NRULE_0119) | Trehalose-phosphate synthase | Rahaq2_4935 |
TPP (NRULE_0120) | Trehalose-6-phosphate phosphatase | Rahaq2_4936 |
Uptake of osmoprotectant(NFUNC_0061) |
必須 | A | OPUAC (NRULE_0213) | Osmoprotectant ABC transporter substrate-binding protein | Rahaq2_0790 Rahaq2_0789 |
OPUAB (NRULE_0214) | Osmoprotectant ABC transporter permease protein | Rahaq2_0791 |
OPUAA (NRULE_0215) | Osmoprotectant ABC transporter ATP-binding protein | Rahaq2_0792 |
C | BCCT (NRULE_0220) | BCCT family transporter | Rahaq2_1446 |
D | PROP (NRULE_0221) | Osmoprotectant transporter | Rahaq2_4966 |
E | OPUE (NRULE_0222) | Sodium/proline symporter | Rahaq2_2523 |
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060) |
必須 | A | EPD (NRULE_0208) | D-erythrose-4-phosphate dehydrogenase | Rahaq2_3600 |
PDXB (NRULE_0209) | Erythronate-4-phosphate dehydrogenase | Rahaq2_1300 |
SERC (NRULE_0210) | Phosphoserine aminotransferase | Rahaq2_3295 Rahaq2_1562 |
PDXA (NRULE_0211) | 4-hydroxythreonine-4-phosphate dehydrogenase | Rahaq2_3860 |
PDXJ (NRULE_0212) | Pyridoxine 5'-phosphate synthase | Rahaq2_3509 |