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Microbe : Saccharothrix espanaensis

Microbe Description

NBRC No. 15066
Scientific name Saccharothrix espanaensis
Synonymous name Not assigned
History IFO 15066 <- NRRL 15764
Other culture collection No. ATCC 51144=DSM 44229=JCM 9112=NBRC 15908=NRRL 15764
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseBN6_34750 BN6_78770
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseBN6_36310 BN6_08910 BN6_75700 BN6_42660
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseBN6_18860
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABN6_39610
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseBN6_00210 BN6_50300 BN6_67720
TRPE
(NRULE_0143)
Anthranilate synthase component IBN6_68440
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseBN6_62130 BN6_12620
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseBN6_41850
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABN6_39610
C
BLAC
(NRULE_0124)
Beta-lactamase class CBN6_49090
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CBN6_49090
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class ABN6_39610
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseBN6_37020
Hygromycin resistance(NFUNC_0055)
RequireA
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseBN6_18860
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseBN6_40490 BN6_17850
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinBN6_37500 BN6_27390 BN6_27370
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBN6_27360
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRBN6_68570
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBN6_27360
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinBN6_27380
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseBN6_03650 BN6_58900
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseBN6_09830
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseBN6_52160
PANC
(NRULE_0118)
Pantothenate synthetaseBN6_03640
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABN6_39610
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseBN6_58660 BN6_55630 BN6_39070
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseBN6_38360
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentBN6_80410
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBN6_16270 BN6_62820 BN6_62810 BN6_62310 BN6_50850 BN6_50680
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseBN6_35870 BN6_48420 BN6_74710 BN6_55610 BN6_21240 BN6_39320 BN6_32530
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseBN6_15790
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseBN6_07650
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BBN6_07620
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EBN6_07630
Streptogramin resistance(NFUNC_0027)
RequireB
VGB
(NRULE_0114)
Virginiamycin B lyaseBN6_45110
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseBN6_36310 BN6_08910 BN6_42660 BN6_75700
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseBN6_61810
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseBN6_61800
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeBN6_61820 BN6_72710
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseBN6_72780
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseBN6_04110
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseBN6_04100
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterBN6_00520
Vancomycin resistance (via D-Ala-D-Lac precursor)(NFUNC_0089)
RequireA
VANA
(NRULE_0265)
D-alanine--D-lactate ligaseBN6_49760
VANH
(NRULE_0266)
D-specific alpha-keto acid dehydrogenaseBN6_49770
VANX
(NRULE_0267)
D-alanyl-D-alanine dipeptidaseBN6_49750
Participant 
VANR
(NRULE_0284)
Two-component system response regulator VanRBN6_49710
 
VANS
(NRULE_0290)
Two-component system histidine kinase VanSBN6_49740
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSBN6_30550
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTBN6_30670

Genomic Overview

BioProject IDPRJEB28
Locus_tag
INSDC entriesHE804045
Sequence statusComplete
Current status
Contig number1
Size(bp) 9,360,653
Gene 8,427
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Complete genome sequence of Saccharothrix espanaensis DSM 44229(T) and comparison to the other completely sequenced Pseudonocardiaceae. (BMC Genomics. 2012) PMID: 22958348

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.6 MB 2.4 MB 1.7 MB 615.0 KB