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微生物 : Saccharopolyspora spinosa

微生物株情報

NBRC番号 15153
学名 Saccharopolyspora spinosa
別名（シノニム） 該当データなし
由来 IFO 15153 <- NRRL 18395 <- Eli Lilly & Co. (F. Mertz, A83543.1)
他保存機関番号 ATCC 49460=DSM 44228=NRRL 18395
他株番号 A83543.1
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSspiN1_010100040910
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSspiN1_010100015100 SspiN1_010100006375
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASspiN1_010100034029
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSspiN1_010100022915 SspiN1_010100013900 SspiN1_010100016231 SspiN1_010100032954
TRPE
(NRULE_0143)
Anthranilate synthase component ISspiN1_010100003268
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSspiN1_010100005870
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASspiN1_010100034029
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseSspiN1_010100019521
Betaine biosynthesis (from glycine)(NFUNC_0050)
必須B
GSDMT
(NRULE_0181)
Glycine/sarcosine/dimethylglycine N-methyltransferaseSspiN1_010100028469
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSspiN1_010100021358
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSspiN1_010100021363
ECTC
(NRULE_0188)
L-ectoine synthaseSspiN1_010100021353
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseSspiN1_010100019621 SspiN1_010100035499
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseSspiN1_010100021348
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSspiN1_010100021358
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSspiN1_010100021363
 
ECTC
(NRULE_0188)
L-ectoine synthaseSspiN1_010100021353
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseSspiN1_010100027544
D
ERE
(NRULE_0168)
Erythromycin esteraseSspiN1_010100041750 SspiN1_010100005905
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSspiN1_010100021915 SspiN1_010100022765 SspiN1_010100021900
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSspiN1_010100021905 SspiN1_010100017626
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSspiN1_010100003223
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSspiN1_010100017626 SspiN1_010100021905
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSspiN1_010100021910
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseSspiN1_010100021168
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseSspiN1_010100013565
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseSspiN1_010100012429
PANC
(NRULE_0118)
Pantothenate synthetaseSspiN1_010100021163
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASspiN1_010100034029
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseSspiN1_010100018521 SspiN1_010100007100
任意 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BSspiN1_010100007110 SspiN1_010100018516
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ESspiN1_010100018531 SspiN1_010100007105
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSspiN1_010100015100 SspiN1_010100006375
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseSspiN1_010100021438
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseSspiN1_010100021443 SspiN1_010100018236
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinSspiN1_010100000950 SspiN1_010100012144
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinSspiN1_010100000955 SspiN1_010100012139
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinSspiN1_010100012134 SspiN1_010100000960
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinSspiN1_010100012129 SspiN1_010100000965
C
BCCT
(NRULE_0220)
BCCT family transporterSspiN1_010100041240 SspiN1_010100033100
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSspiN1_010100027444
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSspiN1_010100027424

ゲノム配列情報

BioProject IDPRJNA73653
ローカスタグSSPN
INSDC entriesNZ_AEYC01000000
ステータスWGS
解析状況
コンティグ数22
サイズ(bp) 8,527,776
遺伝子数 8,148
フィニッシングゴール
アセンブル方法SOAPdenovo v. 1.03; Newbler v. 2.3
冗長度330x (Solexa); 23.5x (454)
シーケンス方法
  • Solexa
  • 454
参考文献
  • Genome sequence of the Spinosyns-producing bacterium Saccharopolyspora spinosa NRRL 18395. (J Bacteriol. 2011) PMID: 21478350

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
2.5 MB 2.1 MB 1.4 MB 672.6 KB