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微生物 : Gordonia amarae

微生物株情報

NBRC番号 15530
学名 Gordonia amarae
別名（シノニム） Gordona amarae (sic)
Nocardia amarae
由来 IFO 15530 <- NCIMB 11222 <- M. Goodfellow <- ? <- M. P. Lechevalier, Se 6
他保存機関番号 ATCC 27808=CCM 2753=JCM 3171=NCIMB 11222=CIP 104501=DSM 43392=HAMBI 2282=NRRL B-16281=NRRL B-8176=VKM Ac-801
他株番号 IMET 7518=IMRU W3960=Lechevalier se 6=N667
参考文献
7981103
Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. (Int J Syst Bacteriol. 1994)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOAMR_33_00540
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOAMR_02_00080 GOAMR_34_00200
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGOAMR_20_01410 GOAMR_20_01430 GOAMR_50_00430 GOAMR_50_00410
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGOAMR_50_00430 GOAMR_50_00410 GOAMR_20_01430 GOAMR_20_01410
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOAMR_62_00400 GOAMR_19_01270 GOAMR_20_01450 GOAMR_45_00640 GOAMR_50_00920 GOAMR_50_00420 GOAMR_50_00900 GOAMR_58_00740 GOAMR_61_01470 GOAMR_61_00030 GOAMR_63_01630 GOAMR_69_00130 GOAMR_80_00320
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOAMR_50_00400 GOAMR_20_01420
任意 
RUBA
(NRULE_0039)
RubredoxinGOAMR_02_00080
 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitGOAMR_20_01440
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOAMR_61_01300 GOAMR_40_00790 GOAMR_26_00700 GOAMR_21_00020 GOAMR_20_00590 GOAMR_20_00010 GOAMR_19_01110 GOAMR_63_00570 GOAMR_72_00710 GOAMR_63_01620 GOAMR_61_01620
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseGOAMR_20_01560
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOAMR_04_00400
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseGOAMR_78_00330
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseGOAMR_33_01060
CATC
(NRULE_0054)
Muconolactone isomeraseGOAMR_78_00340
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseGOAMR_52_00040
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AGOAMR_78_00300
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BGOAMR_78_00310
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseGOAMR_78_00290 GOAMR_23_00120
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseGOAMR_78_00330
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseGOAMR_33_01060
CATC
(NRULE_0054)
Muconolactone isomeraseGOAMR_78_00340
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseGOAMR_52_00040
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AGOAMR_78_00300
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BGOAMR_78_00310
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseGOAMR_23_00120 GOAMR_78_00290
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOAMR_67_00010
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOAMR_35_00010
ECTC
(NRULE_0188)
L-ectoine synthaseGOAMR_67_00020
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOAMR_04_00520
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGOAMR_63_01000
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOAMR_67_00010
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOAMR_35_00010
 
ECTC
(NRULE_0188)
L-ectoine synthaseGOAMR_67_00020
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOAMR_69_00570
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOAMR_50_00080 GOAMR_06_00360 GOAMR_50_00050
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOAMR_50_00070 GOAMR_06_00330
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOAMR_26_00640
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOAMR_50_00070 GOAMR_06_00330
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOAMR_50_00060
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGOAMR_50_00410 GOAMR_50_00430 GOAMR_20_01430 GOAMR_20_01410
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGOAMR_50_00430 GOAMR_20_01410 GOAMR_20_01430 GOAMR_50_00410
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitGOAMR_20_01440
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGOAMR_33_00460
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseGOAMR_25_00110
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOAMR_61_00030 GOAMR_61_01470 GOAMR_58_00740 GOAMR_50_00900 GOAMR_50_00420 GOAMR_69_00130 GOAMR_45_00640 GOAMR_20_01450 GOAMR_19_01270 GOAMR_50_00920 GOAMR_80_00320 GOAMR_63_01630 GOAMR_62_00400
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOAMR_50_00400 GOAMR_20_01420
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOAMR_20_00590 GOAMR_19_01110 GOAMR_20_00010 GOAMR_21_00020 GOAMR_26_00700 GOAMR_40_00790 GOAMR_61_01300 GOAMR_61_01620 GOAMR_63_01620 GOAMR_63_00570 GOAMR_72_00710
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOAMR_72_00740 GOAMR_11_00020 GOAMR_20_00830 GOAMR_34_00930 GOAMR_52_00240
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOAMR_40_00020
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOAMR_40_00050
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOAMR_40_00010
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOAMR_26_00160
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOAMR_26_00170
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinGOAMR_33_01440
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinGOAMR_33_01430
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinGOAMR_33_01420
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinGOAMR_33_01410
C
BCCT
(NRULE_0220)
BCCT family transporterGOAMR_76_00820
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOAMR_19_00280
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOAMR_19_00330

ゲノム配列情報

BioProject IDPRJNA71719
ローカスタグGOAMR
INSDC entriesBAED00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数83
サイズ(bp) 5,306,375
遺伝子数 4,691
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.5 MB 1.5 MB 997.9 KB 356.0 KB