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Microbe : Bacillus subtilis

Microbe Description

NBRC No. 3134
Scientific name Bacillus subtilis
Synonymous name Bacillus subtilis subsp. subtilis
History IFO 3134 <- Iowa State Coll. (1A29) <- ATCC 6633 <- N.R. Smith, 231 <- K.F. Kellerman
Other culture collection No. ATCC 6633=BCRC 10447=CCM 1999=CECT 356=CIP 52.62=DSM 347=IAM 1069=JCM 2499=KCTC 1021=KCTC 1914=KCTC 2189=NCIB 8054=NCIMB 8054=NCTC 10400=NCTC 6752=NRIC 1022=NRIC 1521=NRRL B-209=NRRL B-354=VTCC B-0786=WHO 9
Other No. 1A29=231=PCI 219
Reference
7764545
Purification, characterization, and production of two pectic transeliminases with protopectinase activity from Bacillus subtilis. (Biosci Biotechnol Biochem. 1994)
10425781
Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov. (Int J Syst Bacteriol. 1999)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseBSU6633_07741 BSU6633_17125
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABSU6633_06094
Participant 
BLAD
(NRULE_0125)
Beta-lactamase class DBSU6633_13722
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseBSU6633_00650
TRPE
(NRULE_0143)
Anthranilate synthase component IBSU6633_17963
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseBSU6633_02604
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseBSU6633_04889 BSU6633_05219
B
AZR
(NRULE_0237)
NADPH azoreductaseBSU6633_14662
Arsenical resistance(NFUNC_0004)
RequireB
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinBSU6633_17350
ARSC2
(NRULE_0018)
Arsenate reductaseBSU6633_17355
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseBSU6633_10541
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABSU6633_06094
D
BLAD
(NRULE_0125)
Beta-lactamase class DBSU6633_13722
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireB
GBSB
(NRULE_0176)
Alcohol dehydrogenaseBSU6633_11405
BETB
(NRULE_0177)
Betaine aldehyde dehydrogenaseBSU6633_11410
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseBSU6633_07431 BSU6633_12877
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseBSU6633_12872
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDBSU6633_12882
BIOB
(NRULE_0185)
Biotin synthaseBSU6633_12887
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBBSU6633_07851
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseBSU6633_01834
D
ERE
(NRULE_0168)
Erythromycin esteraseBSU6633_13827
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferaseBSU6633_13942
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinBSU6633_11645 BSU6633_01744
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBSU6633_08761
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRBSU6633_19947
Milk clotting(NFUNC_0072)
RequireA
MCP
(NRULE_0235)
Milk-clotting proteaseBSU6633_08081
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBSU6633_08761
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinBSU6633_08756
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseBSU6633_18098
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseBSU6633_18088
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseBSU6633_10501 BSU6633_08291
PANC
(NRULE_0118)
Pantothenate synthetaseBSU6633_18093
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ABSU6633_06094
B
BLAD
(NRULE_0125)
Beta-lactamase class DBSU6633_13722
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseBSU6633_05964
Participant 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBSU6633_16395 BSU6633_18023 BSU6633_15212
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseBSU6633_09016 BSU6633_17380
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseBSU6633_00130
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseBSU6633_14177
RIBA
(NRULE_0201)
GTP cyclohydrolase-2BSU6633_14177
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDBSU6633_14187
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseBSU6633_14172
RIBE
(NRULE_0204)
Riboflavin synthaseBSU6633_14182
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFBSU6633_07276
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinBSU6633_16250 BSU6633_05029 BSU6633_04837
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinBSU6633_05034 BSU6633_04842 BSU6633_04832 BSU6633_05024 BSU6633_16245
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinBSU6633_04827 BSU6633_16240 BSU6633_05039
C
BCCT
(NRULE_0220)
BCCT family transporterBSU6633_12947
E
OPUE
(NRULE_0222)
Sodium/proline symporterBSU6633_16360 BSU6633_03437
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSBSU6633_17736
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTBSU6633_17731

Genomic Overview

BioProject IDPRJNA43011
Locus_tag
INSDC entriesADGS01000000
Sequence statusWGS
Current status
Contig number37
Size(bp) 3,978,576
Gene 4,038
Finishing goal
Assembly methodNewbler assembler v. 1.1.02.15
Coverage30x
Technology
  • 454
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.2 MB 1.1 MB 758.3 KB 326.8 KB