English site

微生物 : Thermomicrobium roseum

微生物株情報

NBRC番号 該当データなし
学名 Thermomicrobium roseum
別名(シノニム) 該当データなし
由来
他保存機関番号 DSM 5159
他株番号
参考文献
19148287
Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. (PLoS One. 2009)

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemasetrd_A0156
n-alkane hydroxylation(NFUNC_0008)
必須C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunittrd_A0923 trd_A0919
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunittrd_A0923 trd_A0919
FDR1
(NRULE_0032)
Oxygenase electron transfer componenttrd_A0924
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteintrd_A0922
任意 
MMG2
(NRULE_0030)
Multicomponent monooxygenase gamma subunittrd_A0920
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxintrd_A0838 trd_0121 trd_A0921 trd_A0341
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferasetrd_0103
TRPE
(NRULE_0143)
Anthranilate synthase component Itrd_0102
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasetrd_0491
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductasetrd_A0380
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteintrd_1135
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteintrd_A0234
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteintrd_A0234
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteintrd_A0235
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylasetrd_1395 trd_0323 trd_A0929 trd_A0931
任意 
FDR2
(NRULE_0057)
Ferredoxin reductasetrd_A0836
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componenttrd_A0924
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteintrd_A0922
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxintrd_A0838 trd_A0921 trd_0121 trd_A0341
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductasetrd_0085 trd_A0738 trd_1391
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasetrd_0504
RIBA
(NRULE_0201)
GTP cyclohydrolase-2trd_0504
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDtrd_0502
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasetrd_0505
RIBE
(NRULE_0204)
Riboflavin synthasetrd_0503
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFtrd_0769
Trehalose biosynthesis (from D-glucose and ADP-glucose)(NFUNC_0032)
必須A
TRET
(NRULE_0121)
Trehalose synthasetrd_0944
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthasetrd_1931
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxStrd_0026
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTtrd_0025

ゲノム配列情報

BioProject IDPRJNA32569
ローカスタグTRD
INSDC entriesCP001275
ステータスComplete
解析状況
コンティグ数2
サイズ(bp) 2,920,744
遺伝子数 2,859
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum. (PLoS One. 2009) PMID: 19148287

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
874.1 KB 839.7 KB 548.9 KB 219.8 KB