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遺伝子 : Ring-hydroxylating dioxygenase beta subunit (RHDB)

遺伝子情報

ID NRULE_0049
遺伝子ID RHDB
作成日 2012/08/21
タンパク質名
Protein name
Full
Ring-hydroxylating dioxygenase beta subunit
EC
EC 1.14.-.-
Synonym
Full
Aromatic ring-hydroxylating dioxygenase small subunit
遺伝子名 該当データなし
遺伝子条件 PFAM; PF00866; hit=1
参照
Gene Ontology
GO
GO:0016702, F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, IEA:UniProtKB-KW
GO:0019439, P:aromatic compound catabolic process, IEA:UniProtKB-KW
GO:0006725, P:cellular aromatic compound metabolic process, IEA:InterPro
Family and domain databases
InterPro
IPR000391, Rng_hydr_dOase-bsu
Pfam
PF00866, Ring_hydroxyl_B, 1
配列の特徴 該当データなし
注釈
Function
Catalyzes the initial reactions (ring-dihydroxylation) of the aromatic compound degradation
Catalytic activity
Aromatic compound + NADH + O(2) = cis-dihydrodiol compound + NAD(+)
Pathway
Aromatic compound metabolism;
Subunit structure
Aromatic ring-hydroxylating dioxygenase system consists of three or four proteins: the two subunits of the hydroxylase component (alpha (large) and beta (small)), the electron transfer component (ferredoxin and ferredoxin reductase)
Sequence similarities
Belongs to the bacterial ring-hydroxylating dioxygenase beta subunit family
参考文献
Q07945 Pseudomonas putida (Arthrobacter siderocapsulatus).
8344526
The Pseudomonas putida ML2 plasmid-encoded genes for benzene dioxygenase are unusual in codon usage and low in G+C content. (Gene. 1993)
A5W4F1 Pseudomonas putida (strain F1 / ATCC 700007).
2670929
Toluene degradation by Pseudomonas putida F1. Nucleotide sequence of the todC1C2BADE genes and their expression in Escherichia coli. (J Biol Chem. 1989)
Q53123 Rhodococcus jostii (strain RHA1).
7793929
Characterization of biphenyl catabolic genes of gram-positive polychlorinated biphenyl degrader Rhodococcus sp. strain RHA1. (Appl Environ Microbiol. 1995)
P0A112 Pseudomonas putida (Arthrobacter siderocapsulatus).
3243438
Cloning, nucleotide sequence and characterization of genes encoding naphthalene dioxygenase of Pseudomonas putida strain NCIB9816. (Gene. 1988)



関与する機能

機能名
Aromatic hydrocarbon degradation (via hydroxylation by dioxygenase)
Naphthalene degradation (via hydroxylation by dioxygenase)

該当CDS

データダウンロード
学名 NBRC番号 CDS タンパク質名
Acetobacter pasteurianus105190APA32_22040Aromatic-ring-hydroxylating dioxygenase beta subunit
Acetobacter pasteurianus101655APT_2200aromatic-ring-hydroxylating dioxygenase beta subunit
Acetobacter tropicalis101654ATPR_0337aromatic-ring-hydroxylating dioxygenase beta subunit
Acinetobacter radioresistens102413ACRAD_06_00550putative 3-phenylpropionate dioxygenase subunit beta
ACRAD_11_01090anthranilate 1,2-dioxygenase small subunit
ACRAD_20_00030benzoate 1,2-dioxygenase small subunit
ACRAD_20_01470anthranilate 1,2-dioxygenase small subunit
Acinetobacter sp.100985ACT4_038_00450benzoate 1,2-dioxygenase small subunit
Amycolatopsis azurea14573C791_58753-phenylpropionate dioxygenase beta subunit
Amycolatopsis mediterranei13415RAM_36650hypothetical protein
RAM_37080hypothetical protein
Bradyrhizobium diazoefficiens14792blr3401probable aromatic 1,2-dioxygenase beta subunit
Conexibacter woesei100937Cwoe_0436aromatic-ring-hydroxylating dioxygenase beta subunit
Corynebacterium ammoniagenes12612HMPREF0281_00562ring hydroxylating beta subunit
HMPREF0281_01038benzoate 1,2-dioxygenase, small subunit
Corynebacterium callunae15359H924_10125hypothetical protein
Corynebacterium efficiens100395CE2306putative benzoate 1,2-dioxygenase reductase
Corynebacterium glutamicum12168Cgl2405Hypothetical protein
Corynebacterium glutamicum12153KIQ_00480hypothetical protein
Cupriavidus metallidurans102507Rmet_4883benzoate 1,2-dioxygenase, beta subunit
Cystobacter fuscus100088D187_008151ring hydroxylating beta subunit family
Enterobacter aerogenes13534EAE_02330aromatic-ring-hydroxylating dioxygenase subunit beta
EAE_19890benzoate 1,2-dioxygenase, small subunit
Escherichia coli3972EcolC_1138aromatic-ring-hydroxylating dioxygenase beta subunit
Escherichia coli13500WFL_135403-phenylpropionate dioxygenase subunit beta
Escherichia coli12713Y75_25323-phenylpropionate dioxygenase, small (beta) subunit
Escherichia fergusonii102419EFER_0799Aromatic-ring-hydroxylating dioxygenase, beta subunit
EFER_1483benzoate 1,2-dioxygenase beta subunit
Geodermatophilus obscurus13315Gobs_1298benzoate 1,2-dioxygenase, small subunit
Gordonia aichiensis108223GOACH_07_00590putative aromatic hydrocarbon dioxygenase small subunit
GOACH_07_01230benzoate 1,2-dioxygenase small subunit
GOACH_29_00250putative aromatic hydrocarbon dioxygenase small subunit
Gordonia alkanivorans16433GOALK_035_00060putative aromatic hydrocarbon dioxygenase small subunit
GOALK_047_00130benzoate 1,2-dioxygenase small subunit
Gordonia amicalis100051GOAMI_40_00480benzoate 1,2-dioxygenase small subunit
Gordonia bronchialis16047Gbro_4159benzoate 1,2-dioxygenase, small subunit
Gordonia namibiensis108229GONAM_03_00240putative naphthalene dioxygenase small subunit
GONAM_20_00450putative naphthalene dioxygenase small subunit
GONAM_25_00300benzoate 1,2-dioxygenase small subunit
Gordonia polyisoprenivorans16320GOPIP_011_00760benzoate 1,2-dioxygenase small subunit
GOPIP_094_00920p-cumate dioxygenase small subunit
Gordonia rhizosphera16068GORHZ_062_00800benzoate 1,2-dioxygenase small subunit
GORHZ_126_00360hypothetical protein
GORHZ_159_00300hypothetical protein
GORHZ_171_00300hypothetical protein
Gordonia rubripertincta101908GORBP_002_00140putative aromatic hydrocarbon dioxygenase small subunit
GORBP_060_00760benzoate 1,2-dioxygenase small subunit
GORBP_077_00660putative aromatic hydrocarbon dioxygenase small subunit
GORBP_095_00100benzoate 1,2-dioxygenase small subunit
Gordonia sihwensis108236GSI01S_20_00080putative benzene dioxygenase small subunit
GSI01S_20_00200putative benzene dioxygenase small subunit
Gordonia soli108243GS4_19_00690hypothetical protein
Gordonia sputi100414GOSPT_044_00080putative aromatic-ring-hydroxylating dioxygenase beta subunit
GOSPT_141_00320benzoate 1,2-dioxygenase small subunit
Gordonia terrae100016GOTRE_011_00130putative aromatic hydrocarbon dioxygenase small subunit
GOTRE_125_00130benzoate 1,2-dioxygenase small subunit
Hylemonella gracilis14920HGR_01267aromatic-ring-hydroxylating dioxygenase, beta subunit
Klebsiella pneumoniae14438KPR_2935
Klebsiella pneumoniae subsp. rhinoscleromatis105682HMPREF0484_4610benzoate 1,2-dioxygenase, small subunit
Ktedonobacter racemiferKrac_3837aromatic-ring-hydroxylating dioxygenase beta subunit
Kyrpidia tusciae15312Btus_2316aromatic-ring-hydroxylating dioxygenase beta subunit
Btus_2902aromatic-ring-hydroxylating dioxygenase beta subunit
Labrenzia aggregata16684SIAM614_30626aromatic-ring-hydroxylating dioxygenase, beta subunit
SIAM614_30826Ring hydroxylating beta subunit family protein
Marinomonas mediterranea103028Marme_1560benzoate 1,2-dioxygenase, small subunit
Marme_2405aromatic-ring-hydroxylating dioxygenase beta subunit
Marme_3616aromatic-ring-hydroxylating dioxygenase beta subunit
Meiothermus ruber106122Mrub_2684aromatic-ring-hydroxylating dioxygenase beta subunit
Nitriliruptor alkaliphilusNitalDRAFT_07483-phenylpropionate/cinnamic acid dioxygenase, small subunit
NitalDRAFT_17273-phenylpropionate/cinnamic acid dioxygenase, small subunit
NitalDRAFT_4753ethylbenzene dioxygenase beta subunit
Nocardiopsis dassonvillei14626Ndas_4660aromatic-ring-hydroxylating dioxygenase beta subunit
Pseudomonas putida100650PP_3162benzoate dioxygenase, beta subunit
Pseudomonas stutzeri14165PSTAB_1579benzoate dioxygenase, beta subunit
Rhodococcus opacus108011ROP_20990benzoate 1,2-dioxygenase small subunit
ROP_25680putative aromatic hydrocarbon dioxygenase small subunit
ROP_46330p-cumate dioxygenase small subunit
ROP_71720putative aromatic hydrocarbon dioxygenase small subunit
ROP_pROB02-01590benzene dioxygenase small subunit
ROP_pROB02-02060naphthalene dioxygenase small subunit
Saccharomonospora azurea14651SacazDRAFT_04277small subunit of phenylpropionate dioxygenase
Saccharomonospora cyanea14841SaccyDRAFT_1686benzoate 1,2-dioxygenase, small subunit
Saccharopolyspora erythraea13426SACE_4378benzoate 1,2-dioxygenase beta subunit
Saccharopolyspora spinosa15153SspiN1_010100027819aromatic-ring-hydroxylating dioxygenase subunit beta
SspiN1_010100036629hypothetical protein
Serratia odorifera102598HMPREF0758_2079hypothetical protein
Shimwellia blattae105725EB105725_04_000603-phenylpropionate/cinnamic acid dioxygenase beta subunit
EB105725_23_004403-phenylpropionate/cinnamic acid dioxygenase beta subunit
EB105725_26_00450putative oxygenase
Sphingobium japonicum101211SJA_C1-25230small subunit of anthranilate dioxygenase
Sphingobium sp.103272SLG_16650aromatic-ring-hydroxylating dioxygenase beta subunit
Sphingomonas wittichii105917Swit_0743aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_0889aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_0895aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_1532aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_1757aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_1875aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_26352-chlorobenzoate 1,2-dioxygenase
Swit_3057aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_4175aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_4189aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_4281aromatic-ring-hydroxylating dioxygenase, beta subunit
Swit_4896aromatic-ring-hydroxylating dioxygenase, beta subunit
Sporichthya polymorpha12702Spopo_30_02690P-cumate dioxygenase small subunit
Spopo_31_00310Beta subunit of hydroxylase component of benzoat e 1,2-dioxygenase
Starkeya novella14993Snov_2895aromatic-ring-hydroxylating dioxygenase beta subunit
Streptomyces ghanaensis15414SSFG_07173benzoate 1,2-dioxygenase ISP beta subunit
Thauera linaloolentis102519C666_10175p-cumate dioxygenase small subunit (CmtAc)
Thermomicrobium roseumtrd_A03403-phenylpropionate dioxygenase subunit beta (Digoxigenin subunit beta)