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微生物 : Gordonia terrae

微生物株情報

NBRC番号 100016
学名 Gordonia terrae
別名（シノニム） Gordona terrae (sic)
Rhodococcus terrae
由来 JCM 3206 <- KCC A-0206 <- M. Goodfellow, N659 <- H. Mordarska, T5 <- M. Tsukamura, 3612
他保存機関番号 ATCC 25594=CCM 2633=CCRC 13382=CCUG 34959=CIP 104295=DSM 43249=IFM 0161=JCM 3229=KCTC 9807=LMG 5369=NCTC 10669=NRRL B-16283=VKM Ac-1023=BCRC 13382=CECT 5707
他株番号 N659=IMET 7371=3612=T5
参考文献
874450
The actinomycete-genus Rhodococcus: a home for the "rhodochrous" complex. (J Gen Microbiol. 1977)
4109926
Proposal of a new genus, Gordona, for slightly acid-fast organisms occurring in sputa of patients with pulmonary disease and in soil. (J Gen Microbiol. 1971)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOTRE_017_00090
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153GOTRE_050_00060
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOTRE_037_00320
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGOTRE_175_00620 GOTRE_175_00640
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGOTRE_175_00620 GOTRE_175_00640
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOTRE_125_01020 GOTRE_009_00080 GOTRE_011_00150 GOTRE_015_00290 GOTRE_049_00590 GOTRE_054_00140 GOTRE_055_00070 GOTRE_060_01120 GOTRE_060_01140 GOTRE_074_00080 GOTRE_125_00140 GOTRE_125_00810 GOTRE_150_00390 GOTRE_175_00630 GOTRE_175_00910 GOTRE_175_01830
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOTRE_175_00650
任意 
RUBA
(NRULE_0039)
RubredoxinGOTRE_037_00310 GOTRE_037_00300
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOTRE_009_00160 GOTRE_052_00340 GOTRE_125_00120 GOTRE_069_00200 GOTRE_125_01630 GOTRE_145_00420 GOTRE_149_00080 GOTRE_150_00650 GOTRE_044_00510 GOTRE_039_00640 GOTRE_023_00630 GOTRE_023_00410 GOTRE_015_00050 GOTRE_011_00120
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseGOTRE_040_00290
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOTRE_066_00340
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOTRE_136_00690
ARSC1
(NRULE_0017)
Arsenate reductaseGOTRE_130_00190
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOTRE_014_00670
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGOTRE_125_00120
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGOTRE_125_00130
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGOTRE_125_00140
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGOTRE_125_00140
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOTRE_015_00290 GOTRE_009_00080 GOTRE_011_00150 GOTRE_049_00590 GOTRE_054_00140 GOTRE_055_00070 GOTRE_060_01120 GOTRE_060_01140 GOTRE_074_00080 GOTRE_125_01020 GOTRE_125_00140 GOTRE_125_00810 GOTRE_150_00390 GOTRE_175_00630 GOTRE_175_00910 GOTRE_175_01830
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOTRE_023_00630 GOTRE_023_00410 GOTRE_015_00050 GOTRE_011_00120 GOTRE_009_00160 GOTRE_125_01630 GOTRE_125_00120 GOTRE_069_00200 GOTRE_052_00340 GOTRE_044_00510 GOTRE_039_00640 GOTRE_150_00650 GOTRE_149_00080 GOTRE_145_00420
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGOTRE_053_00460
Dibenzothiophene degradation (via desulfurization)(NFUNC_0029)
必須A
DSZA
(NRULE_0103)
Dibenzothiophene-5,5-dioxide monooxygenaseGOTRE_128_00790 GOTRE_120_00030
DSZB
(NRULE_0104)
2'-hydroxybiphenyl-2-sulfinate desulfinaseGOTRE_120_00020
DSZC
(NRULE_0105)
Dibenzothiophene monooxygenaseGOTRE_050_00110
任意 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOTRE_019_00070 GOTRE_011_00200 GOTRE_181_00270 GOTRE_150_00380 GOTRE_150_00300 GOTRE_149_00110 GOTRE_145_01620 GOTRE_125_00610 GOTRE_125_01100 GOTRE_065_00070 GOTRE_039_02070
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOTRE_026_01220
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOTRE_026_01230
ECTC
(NRULE_0188)
L-ectoine synthaseGOTRE_026_01210
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOTRE_071_00320 GOTRE_028_00030
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOTRE_018_00270
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGOTRE_001_00830
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOTRE_009_00370 GOTRE_009_00340
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOTRE_009_00360 GOTRE_049_00190
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOTRE_039_00100
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOTRE_009_00360 GOTRE_049_00190
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOTRE_009_00350
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGOTRE_053_00420
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOTRE_009_00080 GOTRE_175_00910 GOTRE_175_00630 GOTRE_150_00390 GOTRE_125_00810 GOTRE_125_00140 GOTRE_125_01020 GOTRE_074_00080 GOTRE_060_01140 GOTRE_060_01120 GOTRE_055_00070 GOTRE_054_00140 GOTRE_049_00590 GOTRE_015_00290 GOTRE_011_00150 GOTRE_175_01830
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOTRE_175_00650
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOTRE_069_00200 GOTRE_052_00340 GOTRE_044_00510 GOTRE_039_00640 GOTRE_023_00630 GOTRE_023_00410 GOTRE_149_00080 GOTRE_145_00420 GOTRE_015_00050 GOTRE_011_00120 GOTRE_125_00120 GOTRE_150_00650 GOTRE_009_00160 GOTRE_125_01630
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOTRE_125_00610 GOTRE_145_01620 GOTRE_149_00110 GOTRE_150_00300 GOTRE_150_00380 GOTRE_181_00270 GOTRE_125_01100 GOTRE_065_00070 GOTRE_039_02070 GOTRE_019_00070 GOTRE_011_00200
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGOTRE_066_00340
Thiocyanate hydrolase(NFUNC_0003)
必須A
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGOTRE_060_00360
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGOTRE_060_00360
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOTRE_060_00350
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGOTRE_060_00360
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOTRE_060_00350
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGOTRE_060_00360
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGOTRE_060_00350
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOTRE_063_00310
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOTRE_063_00410
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOTRE_063_00300
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOTRE_136_00600
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOTRE_136_00590
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOTRE_039_00050 GOTRE_053_00440
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOTRE_006_00280
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOTRE_006_00230

ゲノム配列情報

BioProject IDPRJDA73365
ローカスタグGOTRE
INSDC entriesBAFD00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数130
サイズ(bp) 5,669,149
遺伝子数 5,129
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.6 MB 1.6 MB 1.1 MB 399.2 KB