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微生物 : Providencia alcalifaciens

微生物株情報

NBRC番号 105687
学名 Providencia alcalifaciens
別名（シノニム） 該当データなし
由来 GTC 00111 <- GIFU 2928 <- NCTC 10286 <- ATCC 9886 <- R. E. Buchanan <- L. de Salles Gomes (<i>Eberthella alcalifaciens</i>)
他保存機関番号 ATCC 9886=BCRC 13995=CCUG 6325=CIP 82.90=DSM 30120=GIFU 2928=GTC 00111=JCM 1673=NCTC 10286
他株番号
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylasePROVALCAL_03590
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporterPROVALCAL_03591
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemasePROVALCAL_01821 PROVALCAL_01863 PROVALCAL_01354
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須B
AAC6
(NRULE_0150)
Aminoglycoside N(6')-acetyltransferasePROVALCAL_00921
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePROVALCAL_03279
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferasePROVALCAL_02618 PROVALCAL_01774
TRPE
(NRULE_0143)
Anthranilate synthase component IPROVALCAL_01773
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductasePROVALCAL_02954 PROVALCAL_00369
Beta-lactam antibiotic resistance(NFUNC_0033)
必須C
BLAC
(NRULE_0124)
Beta-lactamase class CPROVALCAL_02707
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenasePROVALCAL_00577
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthasePROVALCAL_03258
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferasePROVALCAL_03260
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDPROVALCAL_02856 PROVALCAL_03256
BIOB
(NRULE_0185)
Biotin synthasePROVALCAL_03259
Cephalosporin resistance(NFUNC_0048)
必須A
BLAC
(NRULE_0124)
Beta-lactamase class CPROVALCAL_02707
Folate biosynthesis(NFUNC_0044)
必須B
GLAT
(NRULE_0142)
Glutamine amidotransferasePROVALCAL_01774 PROVALCAL_02618
DHPS
(NRULE_0144)
Dihydropteroate synthasePROVALCAL_01054
FOLA
(NRULE_0147)
Dihydrofolate reductasePROVALCAL_00924 PROVALCAL_02266
FOLB
(NRULE_0158)
Dihydroneopterin aldolasePROVALCAL_02246
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinasePROVALCAL_02383
FOLC
(NRULE_0160)
Bifunctional protein FolCPROVALCAL_03339
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IPROVALCAL_01851
PABC
(NRULE_0162)
Aminodeoxychorismate lyasePROVALCAL_03905
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylasePROVALCAL_03590
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferasePROVALCAL_01859
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAPROVALCAL_00734
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBPROVALCAL_00735
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPROVALCAL_03270 PROVALCAL_00920 PROVALCAL_03263
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorPROVALCAL_03270
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPROVALCAL_01715 PROVALCAL_01509 PROVALCAL_03619 PROVALCAL_03265 PROVALCAL_01669
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRPROVALCAL_02332
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRPROVALCAL_01294
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRPROVALCAL_00038
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRPROVALCAL_01699
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPROVALCAL_01669 PROVALCAL_03265 PROVALCAL_01715 PROVALCAL_01509 PROVALCAL_03619
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorPROVALCAL_03270
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPROVALCAL_03264
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinPROVALCAL_03263
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylasePROVALCAL_02386
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferasePROVALCAL_02384
PANE
(NRULE_0117)
2-dehydropantoate 2-reductasePROVALCAL_00216
PANC
(NRULE_0118)
Pantothenate synthetasePROVALCAL_02385
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylasePROVALCAL_00324
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentPROVALCAL_00412 PROVALCAL_02753 PROVALCAL_03821
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductasePROVALCAL_01317 PROVALCAL_01298 PROVALCAL_00323
Polymyxin resistance(NFUNC_0036)
必須A
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAPROVALCAL_02523
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferasePROVALCAL_02521
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferasePROVALCAL_02522
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDPROVALCAL_02524
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEPROVALCAL_02526
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFPROVALCAL_02527
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferasePROVALCAL_02525
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePROVALCAL_02253
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PROVALCAL_02828
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPROVALCAL_00198
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePROVALCAL_00199
RIBE
(NRULE_0204)
Riboflavin synthasePROVALCAL_03150
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPROVALCAL_00161
Streptomycin resistance(NFUNC_0054)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePROVALCAL_03279
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterPROVALCAL_00337 PROVALCAL_00574
D
PROP
(NRULE_0221)
Osmoprotectant transporterPROVALCAL_02741
E
OPUE
(NRULE_0222)
Sodium/proline symporterPROVALCAL_00505
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenasePROVALCAL_00260
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenasePROVALCAL_03334
SERC
(NRULE_0210)
Phosphoserine aminotransferasePROVALCAL_00837
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenasePROVALCAL_02270
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthasePROVALCAL_01725

ゲノム配列情報

BioProject IDPRJNA29297
ローカスタグPROVALCAL
INSDC entriesABXW00000000
ステータスWGS
解析状況
コンティグ数79
サイズ(bp) 4,029,346
遺伝子数 4,022
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
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gz		 FASTA
gz		 TSV
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