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微生物 : Sphingobium japonicum

微生物株情報

NBRC番号 101211
学名 Sphingobium japonicum
別名(シノニム) 該当データなし
由来 Tohoku Univ. (Y. Nagata, UT26S)
他保存機関番号
他株番号 UT26S
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSJA_C1-16990
n-alkane hydroxylation(NFUNC_0008)
必須C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitSJA_C1-12010 SJA_C1-11990
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitSJA_C1-12010 SJA_C1-11990
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_P1-01380 SJA_C1-05160 SJA_C1-12030
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinSJA_C1-12000
任意 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitSJA_C1-12020
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C1-27080 SJA_C1-25240 SJA_C1-25220 SJA_C1-11830 SJA_C1-05560 SJA_C1-02290 SJA_C2-04080 SJA_P1-01460 SJA_C2-03710 SJA_C1-30530 SJA_C1-28540
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSJA_C1-33100
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASJA_C1-21720 SJA_C1-31380
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSJA_C1-08380
TRPE
(NRULE_0143)
Anthranilate synthase component ISJA_C1-16100
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSJA_C1-04260
ARSC1
(NRULE_0017)
Arsenate reductaseSJA_C1-33220 SJA_C1-04250 SJA_C1-16310
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSJA_C1-04260
ARSC2
(NRULE_0018)
Arsenate reductaseSJA_C1-04240
任意 
ARSH
(NRULE_0021)
ArsH proteinSJA_C1-04280
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSJA_C1-02430
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASJA_C1-31380 SJA_C1-21720
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSJA_C1-23140
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseSJA_C1-32560
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseSJA_C1-10300
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSJA_C1-33060
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRSJA_C1-04820
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRSJA_C2-01360
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSJA_C1-33060
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSJA_C1-33080
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSJA_C1-33090
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASJA_C1-31380 SJA_C1-21720
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitSJA_C1-11990 SJA_C1-12010
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitSJA_C1-12010 SJA_C1-11990
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitSJA_C1-12020
B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseSJA_C2-03820
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseSJA_C1-21170
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseSJA_C1-25250
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSJA_P1-01380 SJA_C1-05160 SJA_C1-12030
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinSJA_C1-12000
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSJA_C1-25220 SJA_C1-02290 SJA_P1-01460 SJA_C2-04080 SJA_C2-03710 SJA_C1-30530 SJA_C1-28540 SJA_C1-27080 SJA_C1-25240 SJA_C1-11830 SJA_C1-05560
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSJA_C2-03670 SJA_C1-34960
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSJA_C1-33100
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseSJA_C1-14720
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseSJA_C1-14740

ゲノム配列情報

BioProject IDPRJDA19949
ローカスタグSJA
INSDC entriesAP010803
ステータスComplete
解析状況
コンティグ数5
サイズ(bp) 4,424,862
遺伝子数 4,394
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
  • Sanger
参考文献
  • Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26. (J Bacteriol. 2010) PMID: 20817768

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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