Alanine racemization(NFUNC_0063) |
必須 | A | ALR (NRULE_0228) | Alanine racemase | HMPREF0484_5583 HMPREF0484_2104 |
Ampicillin resistance(NFUNC_0046) |
必須 | A | BLAA (NRULE_0122) | Beta-lactamase class A | HMPREF0484_4462 |
Anthranilate biosynthesis(NFUNC_0038) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | HMPREF0484_5254 HMPREF0484_3175 |
TRPE (NRULE_0143) | Anthranilate synthase component I | HMPREF0484_3174 |
Aromatic azo compounds degradation(NFUNC_0073) |
必須 | A | AZOR (NRULE_0236) | FMN-dependent NADH-azoreductase | HMPREF0484_3056 HMPREF0484_4010 |
Arsenical resistance(NFUNC_0004) |
必須 | A | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | HMPREF0484_0207 |
ARSC1 (NRULE_0017) | Arsenate reductase | HMPREF0484_0206 HMPREF0484_2297 |
Bacitracin resistance(NFUNC_0022) |
必須 | A | UPPP (NRULE_0097) | Undecaprenyl-diphosphatase | HMPREF0484_2463 |
Beta-lactam antibiotic resistance(NFUNC_0033) |
必須 | A | BLAA (NRULE_0122) | Beta-lactamase class A | HMPREF0484_4462 |
Betaine biosynthesis (from choline)(NFUNC_0049) |
必須 | A | BETA (NRULE_0175) | Choline dehydrogenase | HMPREF0484_1573 |
Biotin biosynthesis(NFUNC_0051) |
必須 | A | BIOF (NRULE_0182) | 8-amino-7-oxononanoate synthase | HMPREF0484_1379 |
BIOA (NRULE_0183) | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | HMPREF0484_1381 |
BIOD (NRULE_0184) | ATP-dependent dethiobiotin synthetase BioD | HMPREF0484_4209 HMPREF0484_1377 |
BIOB (NRULE_0185) | Biotin synthase | HMPREF0484_1380 |
Chloramphenicol resistance(NFUNC_0025) |
必須 | A | CAT1 (NRULE_0107) | Chloramphenicol acetyltransferase | HMPREF0484_4739 |
Folate biosynthesis(NFUNC_0044) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | HMPREF0484_3175 HMPREF0484_5254 |
DHPS (NRULE_0144) | Dihydropteroate synthase | HMPREF0484_2908 |
FOLM (NRULE_0146) | Dihydrofolate reductase FolM | HMPREF0484_3011 |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | HMPREF0484_3494 HMPREF0484_2462 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | HMPREF0484_4873 |
FOLC (NRULE_0160) | Bifunctional protein FolC | HMPREF0484_3507 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | HMPREF0484_2124 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | HMPREF0484_3359 |
B | GLAT (NRULE_0142) | Glutamine amidotransferase | HMPREF0484_5254 HMPREF0484_3175 |
DHPS (NRULE_0144) | Dihydropteroate synthase | HMPREF0484_2908 |
FOLA (NRULE_0147) | Dihydrofolate reductase | HMPREF0484_4981 |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | HMPREF0484_3494 HMPREF0484_2462 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | HMPREF0484_4873 |
FOLC (NRULE_0160) | Bifunctional protein FolC | HMPREF0484_3507 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | HMPREF0484_2124 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | HMPREF0484_3359 |
Fosfomycin resistance(NFUNC_0023) |
必須 | A | FOSA (NRULE_0098) | Glutathione transferase FosA | HMPREF0484_5126 |
Macrolide antibiotic resistance(NFUNC_0045) |
必須 | B | RLMA (NRULE_0165) | 23S rRNA (guanine-N(1))-methyltransferase | HMPREF0484_2134 |
Metal-binding protein(NFUNC_0105) |
必須 | A | MOP (NRULE_0322) | Putative molybdenum-binding protein | HMPREF0484_1413 HMPREF0484_1409 |
B | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | HMPREF0484_1413 |
C | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | HMPREF0484_2247 HMPREF0484_4279 HMPREF0484_1411 HMPREF0484_5659 |
E | CUER (NRULE_0328) | Copper-responsive transcriptional regulator CueR | HMPREF0484_1829 |
F | SOXR (NRULE_0329) | Redox-sensitive transcriptional activator SoxR | HMPREF0484_5554 |
H | NIKR (NRULE_0331) | Nickel-responsive transcriptional regulator NikR | HMPREF0484_0812 |
I | ISCR (NRULE_0332) | Rrf2 family transcriptional regulator IscR | HMPREF0484_0537 |
Molybdate transport (ABC transporter)(NFUNC_0097) |
必須 | A | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | HMPREF0484_1411 HMPREF0484_2247 HMPREF0484_4279 HMPREF0484_5659 |
任意 | | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | HMPREF0484_1413 |
| MODB (NRULE_0325) | Molybdate ABC transporter permease protein | HMPREF0484_1410 |
| MODC (NRULE_0326) | Molybdate ABC transporter ATP-binding protein | HMPREF0484_1409 |
(R)-pantothenate biosynthesis(NFUNC_0030) |
必須 | A | PAND (NRULE_0115) | Aspartate 1-decarboxylase | HMPREF0484_4876 |
PANB (NRULE_0116) | 3-methyl-2-oxobutanoate hydroxymethyltransferase | HMPREF0484_4874 |
PANE (NRULE_0117) | 2-dehydropantoate 2-reductase | HMPREF0484_2627 |
PANC (NRULE_0118) | Pantothenate synthetase | HMPREF0484_4875 |
Penicillin resistance(NFUNC_0047) |
必須 | A | BLAA (NRULE_0122) | Beta-lactamase class A | HMPREF0484_4462 |
Pyrroloquinoline quinone biosynthesis(NFUNC_0020) |
必須 | A | PQQC (NRULE_0092) | Pyrroloquinoline-quinone synthase | HMPREF0484_4541 |
任意 | | PQQB (NRULE_0091) | Coenzyme PQQ synthesis protein B | HMPREF0484_4540 |
| PQQD (NRULE_0093) | Coenzyme PQQ synthesis protein D | HMPREF0484_4542 |
| PQQE (NRULE_0094) | Coenzyme PQQ synthesis protein E | HMPREF0484_4543 |
| PQQF (NRULE_0095) | Coenzyme PQQ synthesis protein F | HMPREF0484_4545 |
Riboflavin biosynthesis(NFUNC_0058) |
必須 | A | RIBB (NRULE_0200) | 3,4-dihydroxy-2-butanone 4-phosphate synthase | HMPREF0484_2472 |
RIBA (NRULE_0201) | GTP cyclohydrolase-2 | HMPREF0484_3158 |
RIBD (NRULE_0202) | Riboflavin biosynthesis protein RibD | HMPREF0484_2615 |
RIBH (NRULE_0203) | 6,7-dimethyl-8-ribityllumazine synthase | HMPREF0484_2616 |
RIBE (NRULE_0204) | Riboflavin synthase | HMPREF0484_4720 |
任意 | | RIBF (NRULE_0205) | Riboflavin biosynthesis protein RibF | HMPREF0484_4998 |
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031) |
必須 | A | TPS (NRULE_0119) | Trehalose-phosphate synthase | HMPREF0484_2194 |
TPP (NRULE_0120) | Trehalose-6-phosphate phosphatase | HMPREF0484_2195 |
Uptake of osmoprotectant(NFUNC_0061) |
必須 | A | OPUAC (NRULE_0213) | Osmoprotectant ABC transporter substrate-binding protein | HMPREF0484_4029 |
OPUAB (NRULE_0214) | Osmoprotectant ABC transporter permease protein | HMPREF0484_4028 |
OPUAA (NRULE_0215) | Osmoprotectant ABC transporter ATP-binding protein | HMPREF0484_4026 |
C | BCCT (NRULE_0220) | BCCT family transporter | HMPREF0484_2405 HMPREF0484_1570 HMPREF0484_3753 |
D | PROP (NRULE_0221) | Osmoprotectant transporter | HMPREF0484_5511 |
E | OPUE (NRULE_0222) | Sodium/proline symporter | HMPREF0484_3723 |
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060) |
必須 | A | EPD (NRULE_0208) | D-erythrose-4-phosphate dehydrogenase | HMPREF0484_2741 |
PDXB (NRULE_0209) | Erythronate-4-phosphate dehydrogenase | HMPREF0484_3513 |
SERC (NRULE_0210) | Phosphoserine aminotransferase | HMPREF0484_1231 |
PDXA (NRULE_0211) | 4-hydroxythreonine-4-phosphate dehydrogenase | HMPREF0484_3328 HMPREF0484_4977 |
PDXJ (NRULE_0212) | Pyridoxine 5'-phosphate synthase | HMPREF0484_0567 |