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Microbe : Klebsiella pneumoniae subsp. rhinoscleromatis

Microbe Description

NBRC No. 105682
Scientific name Klebsiella pneumoniae subsp. rhinoscleromatis
Synonymous name Klebsiella rhinoscleromatis
History GTC 00101 <- GIFU 2917 <- ATCC 13884 <- NCTC 5046 <- E. Snijders, R-70
Other culture collection No. ATCC 13884=BCRC 17593=CCM 5791=CCUG 417=CECT 852=CIP 52.210=DSM 16231=GIFU 2917=GTC 00101=JCM 1664=LMG 3178=LMG 3184=NCDC 417-68=NCTC 5046
Other No. R-70=191
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHMPREF0484_5583 HMPREF0484_2104
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AHMPREF0484_4462
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF0484_5254 HMPREF0484_3175
TRPE
(NRULE_0143)
Anthranilate synthase component IHMPREF0484_3174
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHMPREF0484_3056 HMPREF0484_4010
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinHMPREF0484_0207
ARSC1
(NRULE_0017)
Arsenate reductaseHMPREF0484_0206 HMPREF0484_2297
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHMPREF0484_2463
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AHMPREF0484_4462
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseHMPREF0484_1573
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseHMPREF0484_1379
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseHMPREF0484_1381
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDHMPREF0484_4209 HMPREF0484_1377
BIOB
(NRULE_0185)
Biotin synthaseHMPREF0484_1380
Chloramphenicol resistance(NFUNC_0025)
RequireA
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseHMPREF0484_4739
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF0484_3175 HMPREF0484_5254
DHPS
(NRULE_0144)
Dihydropteroate synthaseHMPREF0484_2908
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMHMPREF0484_3011
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseHMPREF0484_3494 HMPREF0484_2462
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseHMPREF0484_4873
FOLC
(NRULE_0160)
Bifunctional protein FolCHMPREF0484_3507
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IHMPREF0484_2124
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseHMPREF0484_3359
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF0484_5254 HMPREF0484_3175
DHPS
(NRULE_0144)
Dihydropteroate synthaseHMPREF0484_2908
FOLA
(NRULE_0147)
Dihydrofolate reductaseHMPREF0484_4981
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseHMPREF0484_3494 HMPREF0484_2462
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseHMPREF0484_4873
FOLC
(NRULE_0160)
Bifunctional protein FolCHMPREF0484_3507
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IHMPREF0484_2124
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseHMPREF0484_3359
Fosfomycin resistance(NFUNC_0023)
RequireA
FOSA
(NRULE_0098)
Glutathione transferase FosAHMPREF0484_5126
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseHMPREF0484_2134
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinHMPREF0484_1413 HMPREF0484_1409
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorHMPREF0484_1413
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF0484_2247 HMPREF0484_4279 HMPREF0484_1411 HMPREF0484_5659
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRHMPREF0484_1829
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRHMPREF0484_5554
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRHMPREF0484_0812
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRHMPREF0484_0537
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF0484_1411 HMPREF0484_2247 HMPREF0484_4279 HMPREF0484_5659
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorHMPREF0484_1413
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinHMPREF0484_1410
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinHMPREF0484_1409
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseHMPREF0484_4876
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseHMPREF0484_4874
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseHMPREF0484_2627
PANC
(NRULE_0118)
Pantothenate synthetaseHMPREF0484_4875
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AHMPREF0484_4462
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseHMPREF0484_4541
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BHMPREF0484_4540
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein DHMPREF0484_4542
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EHMPREF0484_4543
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein FHMPREF0484_4545
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseHMPREF0484_2472
RIBA
(NRULE_0201)
GTP cyclohydrolase-2HMPREF0484_3158
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDHMPREF0484_2615
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseHMPREF0484_2616
RIBE
(NRULE_0204)
Riboflavin synthaseHMPREF0484_4720
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFHMPREF0484_4998
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseHMPREF0484_2194
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseHMPREF0484_2195
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinHMPREF0484_4029
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinHMPREF0484_4028
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinHMPREF0484_4026
C
BCCT
(NRULE_0220)
BCCT family transporterHMPREF0484_2405 HMPREF0484_1570 HMPREF0484_3753
D
PROP
(NRULE_0221)
Osmoprotectant transporterHMPREF0484_5511
E
OPUE
(NRULE_0222)
Sodium/proline symporterHMPREF0484_3723
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseHMPREF0484_2741
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseHMPREF0484_3513
SERC
(NRULE_0210)
Phosphoserine aminotransferaseHMPREF0484_1231
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseHMPREF0484_3328 HMPREF0484_4977
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseHMPREF0484_0567

Genomic Overview

BioProject IDPRJNA40083
Locus_tag
INSDC entriesACZD01000000
Sequence statusWGS
Current status
Contig number268
Size(bp) 5,280,675
Gene 5,671
Finishing goal
Assembly method
Coverage21x
Technology
  • 454
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
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FASTA
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TSV
uncompressed
1.6 MB 1.5 MB 1011.4 KB 485.5 KB