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Microbe : Providencia alcalifaciens

Microbe Description

NBRC No. 105687
Scientific name Providencia alcalifaciens
Synonymous name Not assigned
History GTC 00111 <- GIFU 2928 <- NCTC 10286 <- ATCC 9886 <- R. E. Buchanan <- L. de Salles Gomes (<i>Eberthella alcalifaciens</i>)
Other culture collection No. ATCC 9886=BCRC 13995=CCUG 6325=CIP 82.90=DSM 30120=GIFU 2928=GTC 00111=JCM 1673=NCTC 10286
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Acid resistance (by GABA antiporter)(NFUNC_0071)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylasePROVALCAL_03590
GADC
(NRULE_0234)
Glutamate/gamma-aminobutyrate antiporterPROVALCAL_03591
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemasePROVALCAL_01821 PROVALCAL_01863 PROVALCAL_01354
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireB
AAC6
(NRULE_0150)
Aminoglycoside N(6')-acetyltransferasePROVALCAL_00921
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePROVALCAL_03279
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferasePROVALCAL_02618 PROVALCAL_01774
TRPE
(NRULE_0143)
Anthranilate synthase component IPROVALCAL_01773
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductasePROVALCAL_02954 PROVALCAL_00369
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CPROVALCAL_02707
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenasePROVALCAL_00577
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthasePROVALCAL_03258
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferasePROVALCAL_03260
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDPROVALCAL_02856 PROVALCAL_03256
BIOB
(NRULE_0185)
Biotin synthasePROVALCAL_03259
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CPROVALCAL_02707
Folate biosynthesis(NFUNC_0044)
RequireB
GLAT
(NRULE_0142)
Glutamine amidotransferasePROVALCAL_01774 PROVALCAL_02618
DHPS
(NRULE_0144)
Dihydropteroate synthasePROVALCAL_01054
FOLA
(NRULE_0147)
Dihydrofolate reductasePROVALCAL_00924 PROVALCAL_02266
FOLB
(NRULE_0158)
Dihydroneopterin aldolasePROVALCAL_02246
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinasePROVALCAL_02383
FOLC
(NRULE_0160)
Bifunctional protein FolCPROVALCAL_03339
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IPROVALCAL_01851
PABC
(NRULE_0162)
Aminodeoxychorismate lyasePROVALCAL_03905
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylasePROVALCAL_03590
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferasePROVALCAL_01859
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAPROVALCAL_00734
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBPROVALCAL_00735
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPROVALCAL_03270 PROVALCAL_00920 PROVALCAL_03263
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorPROVALCAL_03270
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPROVALCAL_01715 PROVALCAL_01509 PROVALCAL_03619 PROVALCAL_03265 PROVALCAL_01669
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRPROVALCAL_02332
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRPROVALCAL_01294
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRPROVALCAL_00038
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRPROVALCAL_01699
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPROVALCAL_01669 PROVALCAL_03265 PROVALCAL_01715 PROVALCAL_01509 PROVALCAL_03619
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorPROVALCAL_03270
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPROVALCAL_03264
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinPROVALCAL_03263
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylasePROVALCAL_02386
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferasePROVALCAL_02384
PANE
(NRULE_0117)
2-dehydropantoate 2-reductasePROVALCAL_00216
PANC
(NRULE_0118)
Pantothenate synthetasePROVALCAL_02385
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylasePROVALCAL_00324
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentPROVALCAL_00412 PROVALCAL_02753 PROVALCAL_03821
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductasePROVALCAL_01317 PROVALCAL_01298 PROVALCAL_00323
Polymyxin resistance(NFUNC_0036)
RequireA
ARNA
(NRULE_0132)
Bifunctional polymyxin resistance protein ArnAPROVALCAL_02523
ARNB
(NRULE_0133)
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferasePROVALCAL_02521
ARNC
(NRULE_0134)
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferasePROVALCAL_02522
ARND
(NRULE_0135)
Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnDPROVALCAL_02524
ARNE
(NRULE_0136)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnEPROVALCAL_02526
ARNF
(NRULE_0137)
Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnFPROVALCAL_02527
ARNT
(NRULE_0138)
Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferasePROVALCAL_02525
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePROVALCAL_02253
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PROVALCAL_02828
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPROVALCAL_00198
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePROVALCAL_00199
RIBE
(NRULE_0204)
Riboflavin synthasePROVALCAL_03150
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPROVALCAL_00161
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePROVALCAL_03279
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterPROVALCAL_00337 PROVALCAL_00574
D
PROP
(NRULE_0221)
Osmoprotectant transporterPROVALCAL_02741
E
OPUE
(NRULE_0222)
Sodium/proline symporterPROVALCAL_00505
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenasePROVALCAL_00260
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenasePROVALCAL_03334
SERC
(NRULE_0210)
Phosphoserine aminotransferasePROVALCAL_00837
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenasePROVALCAL_02270
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthasePROVALCAL_01725

Genomic Overview

BioProject IDPRJNA29297
Locus_tagPROVALCAL
INSDC entriesABXW00000000
Sequence statusWGS
Current status
Contig number79
Size(bp) 4,029,346
Gene 4,022
Finishing goal
Assembly method
Coverage
Technology
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
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TSV
uncompressed
1.2 MB 1.1 MB 756.9 KB 336.4 KB