English site

Microbe : Sphingomonas wittichii

Microbe Description

NBRC No. 105917
Scientific name Sphingomonas wittichii
Synonymous name Not assigned
History JCM 15750 <- DSM 6014 <- R.M. Wittich, RW1
Other culture collection No. CCUG 31198=CIP 107293=DSM 6014=JCM 10273=JCM 15750=KCTC 12908=MTCC 7933=NBRC 100425
Other No.
Reference
1575472
Metabolism of dibenzo-p-dioxin by Sphingomonas sp. strain RW1. (Appl Environ Microbiol. 1992)
7764304
Purification of two isofunctional hydrolases (EC 3.7.1.8) in the degradative pathway for dibenzofuran in Sphingomonas sp. strain RW1. (Biodegradation. 1993)
8226678
Characterization of 2,2',3-trihydroxybiphenyl dioxygenase, an extradiol dioxygenase from the dibenzofuran- and dibenzo-p-dioxin-degrading bacterium Sphingomonas sp. strain RW1. (J Bacteriol. 1993)
8407823
Dibenzofuran 4,4a-dioxygenase from Sphingomonas sp. strain RW1: angular dioxygenation by a three-component enzyme system. (J Bacteriol. 1993)
11321072
Proposal of Sphingomonas wittichii sp. nov. for strain RW1T, known as a dibenzo-p-dioxin metabolizer. (Int J Syst Evol Microbiol. 2001)
16535225
Degradation of Chlorinated Dibenzofurans and Dibenzo-p-Dioxins by Sphingomonas sp. Strain RW1. (Appl Environ Microbiol. 1996)

Functional Potential >>Details

Download
TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseSwit_0807 Swit_0013
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseSwit_2677
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseSwit_3227
TRPE
(NRULE_0143)
Anthranilate synthase component ISwit_2352
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseSwit_1051
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSwit_2282 Swit_2250
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSwit_0660
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSwit_0645
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseSwit_0863
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseSwit_4599
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
RequireA
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseSwit_0977
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseSwit_0975
CATC
(NRULE_0054)
Muconolactone isomeraseSwit_0976
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSwit_0978 Swit_1070
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASwit_4338
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSwit_4337
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSwit_4336 Swit_0752 Swit_5019 Swit_4887
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseSwit_0977
CATC
(NRULE_0054)
Muconolactone isomeraseSwit_0976
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseSwit_1070 Swit_0978
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ASwit_4338
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BSwit_4337
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseSwit_4336 Swit_0752 Swit_5019 Swit_4887
CATB1
(NRULE_0386)
Muconate cycloisomeraseSwit_0975
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseSwit_1817
Metal-binding protein(NFUNC_0105)
RequireC
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSwit_1381 Swit_4418
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSwit_4418 Swit_1381
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSwit_4417
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSwit_4416
Phenol degradation(NFUNC_0028)
RequireC
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseSwit_3045 Swit_2298
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseSwit_0898 Swit_4920 Swit_2055
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSwit_3096 Swit_1434 Swit_0757
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSwit_4150 Swit_3416 Swit_3413 Swit_3410 Swit_3409 Swit_3396 Swit_3307 Swit_3266 Swit_3264 Swit_3062 Swit_3056 Swit_3024 Swit_2634 Swit_2521 Swit_2502 Swit_2310 Swit_2285 Swit_2271 Swit_2261 Swit_2260 Swit_2253 Swit_2251 Swit_2239 Swit_2053 Swit_2034 Swit_1988 Swit_1987 Swit_1874 Swit_1829 Swit_1758 Swit_1708 Swit_1687 Swit_1686 Swit_1559 Swit_1552 Swit_1550 Swit_1549 Swit_1543 Swit_1542 Swit_1541 Swit_1531 Swit_1396 Swit_1067 Swit_0973 Swit_0969 Swit_0966 Swit_0890 Swit_4897 Swit_4861 Swit_4621 Swit_4297 Swit_4280 Swit_4278 Swit_4273 Swit_4269 Swit_4188 Swit_4174 Swit_0896 Swit_0893 Swit_0837 Swit_0744 Swit_0672 Swit_0538 Swit_0504 Swit_0336 Swit_0324 Swit_0962 Swit_0932
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSwit_4109 Swit_4267 Swit_1899
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytaseSwit_0531
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseSwit_2677

Genomic Overview

BioProject IDPRJNA17343
Locus_tagSWIT
INSDC entriesCP000699
Sequence statusComplete
Current status
Contig number3
Size(bp) 5,915,246
Gene 5,345
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1. (J Bacteriol. 2010) PMID: 20833805

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.7 MB 1.5 MB 1.1 MB 411.6 KB