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微生物 : Corynebacterium glutamicum

微生物株情報

NBRC番号 12153
学名 Corynebacterium glutamicum
別名(シノニム) Brevibacterium divaricatum
Corynebacterium lilium
由来 IFO 12153 <- ATCC 14067 <- Ajinomoto Co., Inc. (AJ 2247)
他保存機関番号 ATCC 14067=BCRC 11383=CCM 3600=DSM 1413=DSM 20411=DSM 778=IAM 12433=JCM 1308=KCTC 1738=NCIB 9565=NCIMB 9565
他株番号 AJ 2247
参考文献
1713055
Transfer of Brevibacterium divaricatum DSM 20297T, "Brevibacterium flavum" DSM 20411, "Brevibacterium lactofermentum" DSM 20412 and DSM 1412, and Corynebacterium glutamicum and their distinction by rRNA gene restriction patterns. (Int J Syst Bacteriol. 1991)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseKIQ_04660
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseKIQ_09655 KIQ_06367
TRPE
(NRULE_0143)
Anthranilate synthase component IKIQ_06362
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBKIQ_13506 KIQ_02676
ARSC1
(NRULE_0017)
Arsenate reductaseKIQ_09260
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseKIQ_02701
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitKIQ_00485
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitKIQ_00480
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseKIQ_00470
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentKIQ_00475
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentKIQ_00475 KIQ_00580
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinKIQ_00585 KIQ_06412 KIQ_01680 KIQ_00485
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseKIQ_00490
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseKIQ_00495
CATC
(NRULE_0054)
Muconolactone isomeraseKIQ_00500
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseKIQ_00535
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AKIQ_00550
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BKIQ_00555
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseKIQ_00540
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseKIQ_00490
CATC
(NRULE_0054)
Muconolactone isomeraseKIQ_00500
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseKIQ_00535
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AKIQ_00550
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BKIQ_00555
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseKIQ_00540
CATB1
(NRULE_0386)
Muconate cycloisomeraseKIQ_00495
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseKIQ_15622
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseKIQ_09200
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinKIQ_14402
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKIQ_13741
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKIQ_13741
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseKIQ_15058
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseKIQ_14958
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseKIQ_09285
PANC
(NRULE_0118)
Pantothenate synthetaseKIQ_14953
Phenol degradation(NFUNC_0028)
必須C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseKIQ_12310
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentKIQ_00475 KIQ_00580
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinKIQ_00485 KIQ_00585 KIQ_06412 KIQ_01680
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseKIQ_09595 KIQ_07217
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseKIQ_09071
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseKIQ_09106
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeKIQ_09011
Trehalose biosynthesis (from maltose)(NFUNC_0034)
必須B
TRES
(NRULE_0128)
Trehalose synthaseKIQ_00975
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseKIQ_12590
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseKIQ_12580
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterKIQ_10781 KIQ_00825 KIQ_00930
E
OPUE
(NRULE_0222)
Sodium/proline symporterKIQ_06642

ゲノム配列情報

BioProject IDPRJNA72697
ローカスタグKIQ
INSDC entriesAGQQ01000000
ステータスWGS
解析状況
コンティグ数43
サイズ(bp) 3,226,741
遺伝子数 3,068
フィニッシングゴール
アセンブル方法SOAPdenovo v. 1.04
冗長度121.95x
シーケンス方法
  • Illumina GA Iix
参考文献
  • Genome sequence of Corynebacterium glutamicum ATCC 14067, which provides insight into amino acid biosynthesis in coryneform bacteria. (J Bacteriol. 2012) PMID: 22247536

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ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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