English site

微生物 : Brevundimonas diminuta

微生物株情報

NBRC番号 12697
学名 Brevundimonas diminuta
別名(シノニム) Pseudomonas diminuta
由来 IFO 12697 <- Ajinomoto Co., Inc. (AJ 2067) <- IAM 1513 <- ATCC 11568 <- E. Leifson
他保存機関番号 AS 1.1798=ATCC 11568=BCRC 11894=CCUG 1187=CIP 63.27=DSM 7234=IAM 12691=IAM 1513=JCM 2788=LMG 1793=LMG 2089=NCAIM B.01118=NCCB 76050=NCIMB 9393=NCTC 8545=VKM B-1297
他株番号 AJ 2067
参考文献
8068543
Classification of Pseudomonas diminuta Leifson and Hugh 1954 and Pseudomonas vesicularis Busing, Doll, and Freytag 1953 in Brevundimonas gen. nov. as Brevundimonas diminuta comb. nov. and Brevundimonas vesicularis comb. nov., respectively. (Int J Syst Bacteriol. 1994)

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseBDIM_18450 BDIM_25460
n-alkane hydroxylation(NFUNC_0008)
必須C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitBDIM_06830 BDIM_06810
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitBDIM_06830 BDIM_06810
FDR1
(NRULE_0032)
Oxygenase electron transfer componentBDIM_06850
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinBDIM_06820
任意 
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitBDIM_06840
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBDIM_30060 BDIM_19480 BDIM_13850 BDIM_29250
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseBDIM_28810
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ABDIM_00300
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseBDIM_10550
TRPE
(NRULE_0143)
Anthranilate synthase component IBDIM_10570
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBBDIM_02860 BDIM_14020
ARSC1
(NRULE_0017)
Arsenate reductaseBDIM_02850 BDIM_14010
任意 
ARSH
(NRULE_0021)
ArsH proteinBDIM_14040 BDIM_02880
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseBDIM_05060
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ABDIM_00300
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseBDIM_30010
Bioplastic synthesis(NFUNC_0001)
必須A
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseBDIM_17440
任意 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseBDIM_03840
 
PHAP1
(NRULE_0374)
PhasinBDIM_08780
Chloramphenicol resistance(NFUNC_0025)
必須B
CAT4
(NRULE_0108)
Chloramphenicol acetyltransferaseBDIM_00610
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseBDIM_13960
Metal-binding protein(NFUNC_0105)
必須C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBDIM_13420
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRBDIM_22670
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRBDIM_26910
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinBDIM_13420
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ABDIM_00300
Phenol degradation(NFUNC_0028)
必須A
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitBDIM_06830 BDIM_06810
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitBDIM_06830 BDIM_06810
MMG1
(NRULE_0029)
Multicomponent monooxygenase gamma subunitBDIM_06840
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseBDIM_13970
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentBDIM_06850
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinBDIM_06820
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinBDIM_19480 BDIM_13850 BDIM_30060 BDIM_29250
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseBDIM_02780 BDIM_17600
Phytic acid hydrolysis(NFUNC_0085)
必須A
PHYT
(NRULE_0258)
3-phytaseBDIM_26650
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseBDIM_28810
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterBDIM_26020

ゲノム配列情報

BioProject IDPRJNA46229
ローカスタグBDIM
INSDC entriesADUI01000000
ステータスWGS
解析状況
コンティグ数302
サイズ(bp) 3,240,481
遺伝子数 3,002
フィニッシングゴール
アセンブル方法Newbler v. 1.1.03.24
冗長度58x
シーケンス方法
  • 454 GS FLX
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
962.3 KB 801.3 KB 540.3 KB 231.6 KB