English site

Microbe : Klebsiella pneumoniae

Microbe Description

NBRC No. 14438
Scientific name Klebsiella pneumoniae
Synonymous name Klebsiella pneumoniae subsp. pneumoniae
History IFO 14438 <- Takeda Chem. Ind., Ltd. (T. Nishi, No.1) <- Osaka Univ.
Other culture collection No.
Other No.
Reference
21629720
PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma. (PLoS Negl Trop Dis. 2011)

Functional Potential >>Details

Download
TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseKPR_3220 KPR_0422
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AKPR_2492
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseKPR_0724 KPR_2310
TRPE
(NRULE_0143)
Anthranilate synthase component IKPR_2311
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseKPR_1296 KPR_2860
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinKPR_1724
ARSC1
(NRULE_0017)
Arsenate reductaseKPR_1887 KPR_1725
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseKPR_4493
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AKPR_2492
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseKPR_3975
Chloramphenicol resistance(NFUNC_0025)
RequireA
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseKPR_3058
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseKPR_0724 KPR_2310
DHPS
(NRULE_0144)
Dihydropteroate synthaseKPR_4780
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMKPR_2820
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseKPR_4494 KPR_2013
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseKPR_1072
FOLC
(NRULE_0160)
Bifunctional protein FolCKPR_2001
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IKPR_3240
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseKPR_2134
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseKPR_0724 KPR_2310
DHPS
(NRULE_0144)
Dihydropteroate synthaseKPR_4780
FOLA
(NRULE_0147)
Dihydrofolate reductaseKPR_0969
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseKPR_4494 KPR_2013
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseKPR_1072
FOLC
(NRULE_0160)
Bifunctional protein FolCKPR_2001
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IKPR_3240
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseKPR_2134
Fosfomycin resistance(NFUNC_0023)
RequireA
FOSA
(NRULE_0098)
Glutathione transferase FosAKPR_0833
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseKPR_3250
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinKPR_3816 KPR_3820
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorKPR_3820
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKPR_2673 KPR_1935 KPR_0349 KPR_3818
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRKPR_4221
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRKPR_0446
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikRKPR_5062
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRKPR_1412
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinKPR_0349 KPR_1935 KPR_2673 KPR_3818
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorKPR_3820
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinKPR_3817
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinKPR_3816
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseKPR_1069
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseKPR_1071
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseKPR_4343
PANC
(NRULE_0118)
Pantothenate synthetaseKPR_1070
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AKPR_2492
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseKPR_2418
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BKPR_2419
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein DKPR_2417
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EKPR_2416
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein FKPR_2415
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseKPR_4486
RIBA
(NRULE_0201)
GTP cyclohydrolase-2KPR_2325
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDKPR_4355
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseKPR_4354
RIBE
(NRULE_0204)
Riboflavin synthaseKPR_3042
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFKPR_0953
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseKPR_3305
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseKPR_3306
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinKPR_1279
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinKPR_1280
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinKPR_1281
C
BCCT
(NRULE_0220)
BCCT family transporterpKPR_0129 KPR_3508 KPR_3972
D
PROP
(NRULE_0221)
Osmoprotectant transporterKPR_0484
E
OPUE
(NRULE_0222)
Sodium/proline symporterKPR_3481
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseKPR_4620
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseKPR_1996
SERC
(NRULE_0210)
Phosphoserine aminotransferaseKPR_3643
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseKPR_2164 KPR_2528 KPR_0973
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseKPR_1384

Genomic Overview

BioProject IDPRJNA50357
Locus_tagHMPREF0484
INSDC entriesFO203501
Sequence statusComplete
Current status
Contig number3
Size(bp) 5,413,256
Gene 5,286
Finishing goal
Assembly method
Coverage
Technology
Reference
  • PCR-based identification of Klebsiella pneumoniae subsp. rhinoscleromatis, the agent of rhinoscleroma. (PLoS Negl Trop Dis. 2011) PMID: 21629720

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.6 MB 1.2 MB 951.4 KB 302.8 KB