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微生物 : Saccharomonospora cyanea

微生物株情報

NBRC番号 14841
学名 Saccharomonospora cyanea
別名（シノニム） 該当データなし
由来 IFO 14841 <- SIIA (R.-M. Hu, 86134)
他保存機関番号 ATCC 43724=CGMCC 4.1327=DSM 44106=IMSNU 20119=JCM 7552=KCTC 9478=KCTC 9659=MTCC 1550=SIIA 86134
他株番号 NA-134
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSaccyDRAFT_0547
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseSaccyDRAFT_4868
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseSaccyDRAFT_0986
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSaccyDRAFT_2173 SaccyDRAFT_0433
C
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseSaccyDRAFT_1007
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASaccyDRAFT_2039
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSaccyDRAFT_0056
TRPE
(NRULE_0143)
Anthranilate synthase component ISaccyDRAFT_3697
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSaccyDRAFT_2418
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitSaccyDRAFT_1685
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitSaccyDRAFT_1686
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseSaccyDRAFT_1687
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentSaccyDRAFT_1687
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSaccyDRAFT_0830 SaccyDRAFT_1687 SaccyDRAFT_3198 SaccyDRAFT_3523 SaccyDRAFT_3471
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSaccyDRAFT_1246 SaccyDRAFT_3472 SaccyDRAFT_1904 SaccyDRAFT_1685 SaccyDRAFT_1950
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSaccyDRAFT_3042 SaccyDRAFT_1723
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASaccyDRAFT_2039
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseSaccyDRAFT_4218
C
CHOX
(NRULE_0178)
Choline oxidaseSaccyDRAFT_3246
Betaine biosynthesis (from glycine)(NFUNC_0050)
必須B
GSDMT
(NRULE_0181)
Glycine/sarcosine/dimethylglycine N-methyltransferaseSaccyDRAFT_3579
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseSaccyDRAFT_4226
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSaccyDRAFT_4583
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSaccyDRAFT_4584
ECTC
(NRULE_0188)
L-ectoine synthaseSaccyDRAFT_4582
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseSaccyDRAFT_4581
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSaccyDRAFT_4583
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSaccyDRAFT_4584
 
ECTC
(NRULE_0188)
L-ectoine synthaseSaccyDRAFT_4582
Hygromycin resistance(NFUNC_0055)
必須A
APH7
(NRULE_0157)
Hygromycin-B 7''-O-kinaseSaccyDRAFT_1007
Kanamycin resistance(NFUNC_0052)
必須C
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseSaccyDRAFT_2173 SaccyDRAFT_0433
任意 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseSaccyDRAFT_0986
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseSaccyDRAFT_1117
D
ERE
(NRULE_0168)
Erythromycin esteraseSaccyDRAFT_2534 SaccyDRAFT_3142
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseSaccyDRAFT_4410
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseSaccyDRAFT_2526
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSaccyDRAFT_4514 SaccyDRAFT_4517
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSaccyDRAFT_4516 SaccyDRAFT_0736 SaccyDRAFT_4065
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSaccyDRAFT_1284
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSaccyDRAFT_4516 SaccyDRAFT_0736 SaccyDRAFT_4065
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSaccyDRAFT_4515
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASaccyDRAFT_2039
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseSaccyDRAFT_2356
任意 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BSaccyDRAFT_2353
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ESaccyDRAFT_2354
Streptogramin resistance(NFUNC_0027)
必須B
VGB
(NRULE_0114)
Virginiamycin B lyaseSaccyDRAFT_0552
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseSaccyDRAFT_4624
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseSaccyDRAFT_4625
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinSaccyDRAFT_3937
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinSaccyDRAFT_3936
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinSaccyDRAFT_3935
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinSaccyDRAFT_3934
C
BCCT
(NRULE_0220)
BCCT family transporterSaccyDRAFT_4217 SaccyDRAFT_0083 SaccyDRAFT_0126 SaccyDRAFT_1642 SaccyDRAFT_3127
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSaccyDRAFT_1862
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSaccyDRAFT_1866

ゲノム配列情報

BioProject IDPRJNA61997
ローカスタグSACCYDRAFT
INSDC entriesAHLY01000000
ステータスWGS
解析状況Noncontiguous Finished
コンティグ数5
サイズ(bp) 5,407,901
遺伝子数 5,046
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度30x
シーケンス方法
  • 454
  • Illumina
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
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