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Microbe : Azorhizobium caulinodans

Microbe Description

NBRC No. 14845
Scientific name Azorhizobium caulinodans
Synonymous name Not assigned
History IFO 14845 <- Lab. Microbiol. & Microbial Genet., Belgium <- B. Dreyfus, ORS 571
Other culture collection No. ATCC 43989=CCUG 26647=DSM 5975=IAM 13624=JCM 20966=LMG 6465
Other No. ORS 571
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseAZC_4216 AZC_2065
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AAZC_4278
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseAZC_2207
TRPE
(NRULE_0143)
Anthranilate synthase component IAZC_2208
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseAZC_1287
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinAZC_1272
ARSC1
(NRULE_0017)
Arsenate reductaseAZC_1271 AZC_4550
B
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinAZC_1272
ARSC2
(NRULE_0018)
Arsenate reductaseAZC_1270
Participant 
ARSH
(NRULE_0021)
ArsH proteinAZC_1274
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseAZC_4674
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AAZC_4278
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseAZC_1183
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseAZC_0295 AZC_4691
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseAZC_1845
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseAZC_0305
 
PHAP1
(NRULE_0374)
PhasinAZC_2250
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinAZC_1791 AZC_1054 AZC_2370
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorAZC_1791
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAZC_0922 AZC_2368
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinAZC_0922 AZC_2368
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorAZC_1791
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinAZC_2369
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinAZC_2370
Nitrile hydratase(NFUNC_0002)
RequireA
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaAZC_3797
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaAZC_3798
Participant 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KAZC_3796
 
COBW
(NRULE_0007)
CobW/P47K family proteinAZC_0565 AZC_3934 AZC_3800 AZC_1103 AZC_1001
Nitrogenase(NFUNC_0094)
RequireA
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainAZC_1040
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainAZC_1039
VNFH
(NRULE_0353)
Nitrogenase reductaseAZC_1041 AZC_3443
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class AAZC_4278
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseAZC_4189
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentAZC_1174 AZC_1372
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinAZC_3406 AZC_3427 AZC_3501 AZC_3662 AZC_1173
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseAZC_2984 AZC_0716 AZC_2489 AZC_3159 AZC_4190
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitAZC_1442
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitAZC_1443
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseAZC_1441
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseAZC_1444
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseAZC_1444 AZC_2343 AZC_3458
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AAZC_0994
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BAZC_0995
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseAZC_0996
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitAZC_1442
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitAZC_1443
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseAZC_1441
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseAZC_1444
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit AAZC_0994
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BAZC_0995
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseAZC_0996
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseAZC_3102
RIBA
(NRULE_0201)
GTP cyclohydrolase-2AZC_3102 AZC_4172
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDAZC_1263
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseAZC_1265
RIBE
(NRULE_0204)
Riboflavin synthaseAZC_1264
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFAZC_0098
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseAZC_1404
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseAZC_1403
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeAZC_2750
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseAZC_4115
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseAZC_0482
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseAZC_0483

Genomic Overview

BioProject IDPRJNA58905
Locus_tag
INSDC entriesNC_009937
Sequence statusComplete
Current status
Contig number1
Size(bp) 5,369,772
Gene 4,717
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Involvement of the azorhizobial chromosome partition gene (parA) in the onset of bacteroid differentiation during Sesbania rostrata stem nodule development. (Appl Environ Microbiol. 2011) PMID: 21571889

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.5 MB 1.4 MB 1006.5 KB 336.2 KB