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Microbe : Paenibacillus polymyxa

Microbe Description

NBRC No. 15309
Scientific name Paenibacillus polymyxa
Synonymous name Bacillus polymyxa
History IFO 15309 <- JCM 2507 <- CCM 1459 <- BUCSAV 162
Other culture collection No. ATCC 842=CCM 1459=CCUG 7426=CFBP 4258=CIP 66.22=DSM 36=HAMBI 1897=HAMBI 635=JCM 2507=LMG 13294=LMG 6319=NCCB 24016=NCTC 10343=NRRL B-4317=VKM B-514
Other No. BUCSAV 162?
Reference
8085788
Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. (Antonie Van Leeuwenhoek. 1993)
8863429
Analysis of the beta' subunit of DNA-dependent RNA polymerase does not support the hypothesis inferred from 16S rRNA analysis that Oenococcus oeni (formerly Leuconostoc oenos) is a tachytelic (fast-evolving) bacterium. (Int J Syst Bacteriol. 1996)
9103612
Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. (Int J Syst Bacteriol. 1997)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemasePPT_06605
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomerasePPT_11655
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePPT_22130
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePPT_11625 PPT_05445
B
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePPT_08495
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinasePPT_11115
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferasePPT_00365
TRPE
(NRULE_0143)
Anthranilate synthase component IPPT_16530
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductasePPT_11105
Arsenical resistance(NFUNC_0004)
RequireB
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinPPT_23705
ARSC2
(NRULE_0018)
Arsenate reductasePPT_23700
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasePPT_23440
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBPPT_11120
Human milk oligosaccharides metabolism(NFUNC_0083)
RequireA
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylasePPT_04255
Participant 
GALE
(NRULE_0111)
UDP-glucose 4-epimerasePPT_20305
Kanamycin resistance(NFUNC_0052)
RequireA
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePPT_08495
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePPT_22130
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferasePPT_21645
D
ERE
(NRULE_0168)
Erythromycin esterasePPT_05925
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferasePPT_03275
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPPT_00805
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPPT_09730 PPT_06505 PPT_00670 PPT_19870 PPT_23350 PPT_19540 PPT_18950 PPT_09815
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRPPT_17145
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPPT_00670 PPT_06505 PPT_09730 PPT_09815 PPT_18950 PPT_19540 PPT_19870 PPT_23350
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPPT_19535 PPT_18945
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylasePPT_16380
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferasePPT_16390
PANE
(NRULE_0117)
2-dehydropantoate 2-reductasePPT_03250 PPT_18330
PANC
(NRULE_0118)
Pantothenate synthetasePPT_16385
Phytic acid hydrolysis(NFUNC_0085)
RequireA
PHYT
(NRULE_0258)
3-phytasePPT_01075
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePPT_16780
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PPT_23650
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPPT_23645
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePPT_16775
RIBE
(NRULE_0204)
Riboflavin synthasePPT_16785
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPPT_10600
Streptomycin resistance(NFUNC_0054)
RequireA
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePPT_05445 PPT_11625
C
APH6
(NRULE_0155)
Streptomycin 6-kinasePPT_11115
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinPPT_06525
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinPPT_06525
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinPPT_06530
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSPPT_00470
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTPPT_00475

Genomic Overview

BioProject IDPRJNA200769
Locus_tagPPT
INSDC entriesNZ_AFOX01000000
Sequence statusWGS
Current status
Contig number65
Size(bp) 5,898,380
Gene 5,354
Finishing goal
Assembly methodCLC Genomics Workbench v. 4.6.1
Coverage600x
Technology
  • Illumina GA IIx
Reference
  • Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium. (J Bacteriol. 2011) PMID: 21742878

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.8 MB 1.6 MB 1.0 MB 392.2 KB