English site

微生物 : Paenibacillus polymyxa

微生物株情報

NBRC番号 15309
学名 Paenibacillus polymyxa
別名(シノニム) Bacillus polymyxa
由来 IFO 15309 <- JCM 2507 <- CCM 1459 <- BUCSAV 162
他保存機関番号 ATCC 842=CCM 1459=CCUG 7426=CFBP 4258=CIP 66.22=DSM 36=HAMBI 1897=HAMBI 635=JCM 2507=LMG 13294=LMG 6319=NCCB 24016=NCTC 10343=NRRL B-4317=VKM B-514
他株番号 BUCSAV 162?
参考文献
8085788
Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. (Antonie Van Leeuwenhoek. 1993)
8863429
Analysis of the beta' subunit of DNA-dependent RNA polymerase does not support the hypothesis inferred from 16S rRNA analysis that Oenococcus oeni (formerly Leuconostoc oenos) is a tachytelic (fast-evolving) bacterium. (Int J Syst Bacteriol. 1996)
9103612
Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. (Int J Syst Bacteriol. 1997)

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemasePPT_06605
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomerasePPT_11655
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePPT_22130
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePPT_11625 PPT_05445
B
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePPT_08495
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinasePPT_11115
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferasePPT_00365
TRPE
(NRULE_0143)
Anthranilate synthase component IPPT_16530
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductasePPT_11105
Arsenical resistance(NFUNC_0004)
必須B
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinPPT_23705
ARSC2
(NRULE_0018)
Arsenate reductasePPT_23700
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasePPT_23440
Fosfomycin resistance(NFUNC_0023)
必須B
FOSB
(NRULE_0099)
Metallothiol transferase FosBPPT_11120
Human milk oligosaccharides metabolism(NFUNC_0083)
必須A
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylasePPT_04255
任意 
GALE
(NRULE_0111)
UDP-glucose 4-epimerasePPT_20305
Kanamycin resistance(NFUNC_0052)
必須A
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePPT_08495
任意 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePPT_22130
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferasePPT_21645
D
ERE
(NRULE_0168)
Erythromycin esterasePPT_05925
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferasePPT_03275
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPPT_00805
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPPT_09730 PPT_06505 PPT_00670 PPT_19870 PPT_23350 PPT_19540 PPT_18950 PPT_09815
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRPPT_17145
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPPT_00670 PPT_06505 PPT_09730 PPT_09815 PPT_18950 PPT_19540 PPT_19870 PPT_23350
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPPT_19535 PPT_18945
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylasePPT_16380
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferasePPT_16390
PANE
(NRULE_0117)
2-dehydropantoate 2-reductasePPT_03250 PPT_18330
PANC
(NRULE_0118)
Pantothenate synthetasePPT_16385
Phytic acid hydrolysis(NFUNC_0085)
必須A
PHYT
(NRULE_0258)
3-phytasePPT_01075
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePPT_16780
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PPT_23650
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPPT_23645
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePPT_16775
RIBE
(NRULE_0204)
Riboflavin synthasePPT_16785
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPPT_10600
Streptomycin resistance(NFUNC_0054)
必須A
ANT6
(NRULE_0151)
Aminoglycoside 6-adenylyltransferasePPT_05445 PPT_11625
C
APH6
(NRULE_0155)
Streptomycin 6-kinasePPT_11115
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinPPT_06525
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinPPT_06525
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinPPT_06530
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSPPT_00470
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTPPT_00475

ゲノム配列情報

BioProject IDPRJNA200769
ローカスタグPPT
INSDC entriesNZ_AFOX01000000
ステータスWGS
解析状況
コンティグ数65
サイズ(bp) 5,898,380
遺伝子数 5,354
フィニッシングゴール
アセンブル方法CLC Genomics Workbench v. 4.6.1
冗長度600x
シーケンス方法
  • Illumina GA IIx
参考文献
  • Draft genome sequence of the Paenibacillus polymyxa type strain (ATCC 842T), a plant growth-promoting bacterium. (J Bacteriol. 2011) PMID: 21742878

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
1.8 MB 1.6 MB 1.0 MB 392.2 KB