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微生物 : Gordonia bronchialis

微生物株情報

NBRC番号 16047
学名 Gordonia bronchialis
別名(シノニム) Gordona bronchialis (sic)
Rhodococcus bronchialis
由来 IFO 16047 <- JCM 3198 <- KCC A-0198 <- M. Tsukamura, 3410
他保存機関番号 ATCC 25592=CCM 2631=CCUG 20989=CIP 100847=DSM 43247=JCM 3198=JCM 3231=LMG 5355=NCTC 10667=VKM Ac-956
他株番号 Tsukamura 3410=KCC A-0198
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGbro_1711
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGbro_4212
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGbro_3551 Gbro_3553
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGbro_3551 Gbro_3553
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGbro_3782 Gbro_4133 Gbro_4160 Gbro_4341 Gbro_4810 Gbro_0233 Gbro_0320 Gbro_3552 Gbro_3622 Gbro_3633
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGbro_3554
任意 
RUBA
(NRULE_0039)
RubredoxinGbro_4212
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGbro_0919 Gbro_0188 Gbro_4286 Gbro_4325 Gbro_4158 Gbro_3057 Gbro_1393
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGbro_4087
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGbro_0024
TRPE
(NRULE_0143)
Anthranilate synthase component IGbro_2950
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGbro_2684 Gbro_0793
ARSC1
(NRULE_0017)
Arsenate reductaseGbro_1542
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGbro_3761 Gbro_2438
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGbro_4158
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGbro_4159
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGbro_4160
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGbro_4160
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGbro_4341 Gbro_0233 Gbro_0320 Gbro_3552 Gbro_3622 Gbro_3633 Gbro_3782 Gbro_4133 Gbro_4160 Gbro_4810
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGbro_4325 Gbro_0188 Gbro_0919 Gbro_1393 Gbro_3057 Gbro_4158 Gbro_4286
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGbro_2065
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGbro_2066
ECTC
(NRULE_0188)
L-ectoine synthaseGbro_2064
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGbro_3307
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGbro_2649
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGbro_4507 Gbro_3171 Gbro_4510
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGbro_4509 Gbro_3174
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGbro_2806 Gbro_1480
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGbro_4509 Gbro_3174
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGbro_4508
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGbro_0220 Gbro_1818
任意 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGbro_3622 Gbro_4133 Gbro_3782 Gbro_3633 Gbro_3552 Gbro_0320 Gbro_4810 Gbro_4341 Gbro_0233 Gbro_4160
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGbro_3554
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGbro_4158 Gbro_3057 Gbro_1393 Gbro_0919 Gbro_0188 Gbro_4286 Gbro_4325
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGbro_0922 Gbro_3418 Gbro_1819 Gbro_1694 Gbro_1234 Gbro_0221
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGbro_4087
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGbro_2979
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGbro_2989
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGbro_2978
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGbro_0808
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGbro_0807
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGbro_1485
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGbro_2293
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGbro_2298

ゲノム配列情報

BioProject IDPRJNA29549
ローカスタグ
INSDC entriesCP001802
ステータスComplete
解析状況
コンティグ数2
サイズ(bp) 5,290,012
遺伝子数 4,696
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of Gordonia bronchialis type strain (3410). (Stand Genomic Sci. 2010) PMID: 21304674

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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