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微生物 : Gordonia polyisoprenivorans

微生物株情報

NBRC番号 16320
学名 Gordonia polyisoprenivorans
別名（シノニム） 該当データなし
由来 IFO 16320 <- DSM 44302 <- A. Steinbuchel, Kd2
他保存機関番号 DSM 44302=ATCC BAA-14=CIP 106350=JCM 10675
他株番号 Kd2
参考文献
10555361
Gordonia polyisoprenivorans sp. nov., a rubber-degrading actinomycete isolated from an automobile tyre. (Int J Syst Bacteriol. 1999)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOPIP_001_01590
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153GOPIP_007_00470 GOPIP_035_00030
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGOPIP_061_00440 GOPIP_061_00420
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGOPIP_061_00440 GOPIP_061_00420
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOPIP_044_00690 GOPIP_057_00230 GOPIP_061_00430 GOPIP_064_00240 GOPIP_094_00370 GOPIP_011_01710 GOPIP_004_01190 GOPIP_006_00860 GOPIP_007_00470 GOPIP_011_00750 GOPIP_028_00250 GOPIP_028_00330 GOPIP_028_00510 GOPIP_031_00820 GOPIP_036_00230 GOPIP_039_00850
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOPIP_061_00410
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOPIP_081_00100 GOPIP_064_00230 GOPIP_059_00810 GOPIP_044_00520 GOPIP_039_01230 GOPIP_031_00830 GOPIP_031_02060 GOPIP_030_00100 GOPIP_011_00770 GOPIP_094_00300 GOPIP_094_00950 GOPIP_094_00720 GOPIP_094_00420 GOPIP_094_00960
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseGOPIP_031_00420
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOPIP_019_00660
TRPE
(NRULE_0143)
Anthranilate synthase component IGOPIP_071_00060
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOPIP_025_01110
ARSC1
(NRULE_0017)
Arsenate reductaseGOPIP_064_00160
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOPIP_077_00150 GOPIP_070_00610 GOPIP_054_00700
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGOPIP_011_00770
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGOPIP_011_00760
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGOPIP_011_00750
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGOPIP_011_00750
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOPIP_061_00430 GOPIP_057_00230 GOPIP_044_00690 GOPIP_004_01190 GOPIP_006_00860 GOPIP_007_00470 GOPIP_011_01710 GOPIP_011_00750 GOPIP_028_00250 GOPIP_028_00330 GOPIP_028_00510 GOPIP_031_00820 GOPIP_036_00230 GOPIP_039_00850 GOPIP_094_00370 GOPIP_064_00240
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOPIP_094_00950 GOPIP_011_00770 GOPIP_030_00100 GOPIP_031_02060 GOPIP_031_00830 GOPIP_039_01230 GOPIP_044_00520 GOPIP_059_00810 GOPIP_064_00230 GOPIP_081_00100 GOPIP_094_00960 GOPIP_094_00420 GOPIP_094_00720 GOPIP_094_00300
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOPIP_094_00970 GOPIP_031_00270 GOPIP_035_00020 GOPIP_084_00770
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOPIP_070_00710
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOPIP_070_00730
ECTC
(NRULE_0188)
L-ectoine synthaseGOPIP_070_00700
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOPIP_021_00180
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOPIP_031_03530 GOPIP_060_00450 GOPIP_085_00400 GOPIP_011_01680 GOPIP_031_03560
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOPIP_060_00420 GOPIP_031_03540
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOPIP_032_00320
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOPIP_060_00420 GOPIP_031_03540
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOPIP_031_03550
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseGOPIP_077_01470
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseGOPIP_059_01150
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseGOPIP_075_00770 GOPIP_028_00660
PANC
(NRULE_0118)
Pantothenate synthetaseGOPIP_077_01460
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGOPIP_097_00460 GOPIP_001_00430
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseGOPIP_093_00410 GOPIP_092_00690
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOPIP_035_00020 GOPIP_094_00970 GOPIP_084_00770 GOPIP_031_00270
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOPIP_028_00250 GOPIP_064_00240 GOPIP_094_00370 GOPIP_057_00230 GOPIP_044_00690 GOPIP_039_00850 GOPIP_036_00230 GOPIP_031_00820 GOPIP_028_00510 GOPIP_028_00330 GOPIP_007_00470 GOPIP_011_00750 GOPIP_011_01710 GOPIP_061_00430 GOPIP_004_01190 GOPIP_006_00860
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGOPIP_061_00410
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOPIP_094_00960 GOPIP_081_00100 GOPIP_064_00230 GOPIP_059_00810 GOPIP_044_00520 GOPIP_039_01230 GOPIP_031_02060 GOPIP_094_00720 GOPIP_030_00100 GOPIP_011_00770 GOPIP_031_00830 GOPIP_094_00300 GOPIP_094_00950 GOPIP_094_00420
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOPIP_005_00300 GOPIP_001_00420 GOPIP_007_00410 GOPIP_031_00230 GOPIP_028_00020 GOPIP_039_01260 GOPIP_043_00560 GOPIP_055_00010 GOPIP_062_00280 GOPIP_087_01510
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOPIP_059_00030
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOPIP_059_00130
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOPIP_059_00020
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOPIP_087_02380
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOPIP_087_02370
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOPIP_032_00270
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOPIP_056_00160
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOPIP_056_00210

ゲノム配列情報

BioProject IDPRJDA71853
ローカスタグGOPIP
INSDC entriesBAEI00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数113
サイズ(bp) 6,285,478
遺伝子数 5,635
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.3
冗長度
シーケンス方法
  • Roche 454
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.8 MB 1.7 MB 1.2 MB 436.7 KB