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Microbe : Labrenzia aggregata

Microbe Description

NBRC No. 16684
Scientific name Labrenzia aggregata
Synonymous name Stappia aggregata
History IFO 16684 <- IAM 12614 <- ATCC 25650 <- R. Ahrens, B1
Other culture collection No. ATCC 25650=DSM 13394=IAM 12614=JCM 20685=LMG 122=NCIMB 2208=NCMB 2208
Other No. B1
Reference
12501429
Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. (J Gen Appl Microbiol. 1998)
17473266
Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina comb. nov. and of Stappia alba as Labrenzia alba comb. nov., and emended descriptions of the genera Pannonibacter, Stappia and Roseibium, and of the species Roseibium denhamense and Roseibium hamelinense. (Int J Syst Evol Microbiol. 2007)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseSIAM614_11183
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseSIAM614_17824
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseSIAM614_27433
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASIAM614_09023
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseSIAM614_11853
TRPE
(NRULE_0143)
Anthranilate synthase component ISIAM614_11853
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseSIAM614_27572
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSIAM614_19776 SIAM614_29186 SIAM614_26623
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSIAM614_23397
ARSC1
(NRULE_0017)
Arsenate reductaseSIAM614_19681
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSIAM614_23397
ARSC2
(NRULE_0018)
Arsenate reductaseSIAM614_25167
Participant 
ARSH
(NRULE_0021)
ArsH proteinSIAM614_19676
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSIAM614_07873
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASIAM614_09023
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseSIAM614_05120
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSIAM614_27702
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseSIAM614_02556
Histamine biosynthesis(NFUNC_0078)
RequireA
HDCA
(NRULE_0244)
Histidine decarboxylase proenzymeSIAM614_11398
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseSIAM614_01604
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSIAM614_28052 SIAM614_22287 SIAM614_01901 SIAM614_22882 SIAM614_11493 SIAM614_09978
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSIAM614_07218 SIAM614_23302 SIAM614_24907 SIAM614_30091 SIAM614_22362 SIAM614_20850
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRSIAM614_07908
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSIAM614_09498
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSIAM614_30091 SIAM614_07218 SIAM614_22362 SIAM614_20850 SIAM614_24907 SIAM614_23302
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSIAM614_28047
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSIAM614_28052
Nitrile hydratase(NFUNC_0002)
RequireA
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaSIAM614_09388
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaSIAM614_09383
Participant 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KSIAM614_09378
 
COBW
(NRULE_0007)
CobW/P47K family proteinSIAM614_24222 SIAM614_19119 SIAM614_13538 SIAM614_27163
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ASIAM614_09023
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseSIAM614_12048
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseSIAM614_03563
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseSIAM614_24712
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSIAM614_30616 SIAM614_30836 SIAM614_12153 SIAM614_13893
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSIAM614_30821 SIAM614_02421 SIAM614_12148 SIAM614_23002 SIAM614_22987 SIAM614_22982 SIAM614_16407 SIAM614_30621 SIAM614_21140
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSIAM614_30841 SIAM614_16887 SIAM614_16532 SIAM614_03850 SIAM614_10108
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseSIAM614_06963
RIBA
(NRULE_0201)
GTP cyclohydrolase-2SIAM614_06963
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDSIAM614_10428
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseSIAM614_10438
RIBE
(NRULE_0204)
Riboflavin synthaseSIAM614_10433
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFSIAM614_05968
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseSIAM614_27433
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterSIAM614_24242

Genomic Overview

BioProject IDPRJNA18315
Locus_tag
INSDC entriesAAUW01000000
Sequence statusWGS
Current status
Contig number48
Size(bp) 6,561,391
Gene 6,314
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Nitrate-dependent anaerobic carbon monoxide oxidation by aerobic CO-oxidizing bacteria. (FEMS Microbiol Ecol. 2006) PMID: 16542399

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
gz
FASTA
gz
TSV
uncompressed
1.9 MB 1.8 MB 1.2 MB 513.0 KB