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微生物 : Labrenzia aggregata

微生物株情報

NBRC番号 16684
学名 Labrenzia aggregata
別名（シノニム） Stappia aggregata
由来 IFO 16684 <- IAM 12614 <- ATCC 25650 <- R. Ahrens, B1
他保存機関番号 ATCC 25650=DSM 13394=IAM 12614=JCM 20685=LMG 122=NCIMB 2208=NCMB 2208
他株番号 B1
参考文献
12501429
Reclassification of marine Agrobacterium species: Proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev. (J Gen Appl Microbiol. 1998)
17473266
Description of Labrenzia alexandrii gen. nov., sp. nov., a novel alphaproteobacterium containing bacteriochlorophyll a, and a proposal for reclassification of Stappia aggregata as Labrenzia aggregata comb. nov., of Stappia marina as Labrenzia marina comb. nov. and of Stappia alba as Labrenzia alba comb. nov., and emended descriptions of the genera Pannonibacter, Stappia and Roseibium, and of the species Roseibium denhamense and Roseibium hamelinense. (Int J Syst Evol Microbiol. 2007)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSIAM614_11183
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseSIAM614_17824
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSIAM614_27433
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASIAM614_09023
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSIAM614_11853
TRPE
(NRULE_0143)
Anthranilate synthase component ISIAM614_11853
Arginine degradation(NFUNC_0074)
必須A
ARGI
(NRULE_0239)
ArginaseSIAM614_27572
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseSIAM614_19776 SIAM614_29186 SIAM614_26623
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSIAM614_23397
ARSC1
(NRULE_0017)
Arsenate reductaseSIAM614_19681
E
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBSIAM614_23397
ARSC2
(NRULE_0018)
Arsenate reductaseSIAM614_25167
任意 
ARSH
(NRULE_0021)
ArsH proteinSIAM614_19676
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSIAM614_07873
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASIAM614_09023
Betaine biosynthesis (from choline)(NFUNC_0049)
必須A
BETA
(NRULE_0175)
Choline dehydrogenaseSIAM614_05120
Bioplastic degradation(NFUNC_0015)
必須A
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseSIAM614_27702
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseSIAM614_02556
Histamine biosynthesis(NFUNC_0078)
必須A
HDCA
(NRULE_0244)
Histidine decarboxylase proenzymeSIAM614_11398
Macrolide antibiotic resistance(NFUNC_0045)
必須D
ERE
(NRULE_0168)
Erythromycin esteraseSIAM614_01604
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSIAM614_28052 SIAM614_22287 SIAM614_01901 SIAM614_22882 SIAM614_11493 SIAM614_09978
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSIAM614_07218 SIAM614_23302 SIAM614_24907 SIAM614_30091 SIAM614_22362 SIAM614_20850
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRSIAM614_07908
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSIAM614_09498
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSIAM614_30091 SIAM614_07218 SIAM614_22362 SIAM614_20850 SIAM614_24907 SIAM614_23302
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSIAM614_28047
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinSIAM614_28052
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaSIAM614_09388
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaSIAM614_09383
任意 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KSIAM614_09378
 
COBW
(NRULE_0007)
CobW/P47K family proteinSIAM614_24222 SIAM614_19119 SIAM614_13538 SIAM614_27163
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASIAM614_09023
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseSIAM614_12048
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseSIAM614_03563
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseSIAM614_24712
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSIAM614_30616 SIAM614_30836 SIAM614_12153 SIAM614_13893
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSIAM614_30821 SIAM614_02421 SIAM614_12148 SIAM614_23002 SIAM614_22987 SIAM614_22982 SIAM614_16407 SIAM614_30621 SIAM614_21140
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseSIAM614_30841 SIAM614_16887 SIAM614_16532 SIAM614_03850 SIAM614_10108
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseSIAM614_06963
RIBA
(NRULE_0201)
GTP cyclohydrolase-2SIAM614_06963
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDSIAM614_10428
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseSIAM614_10438
RIBE
(NRULE_0204)
Riboflavin synthaseSIAM614_10433
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFSIAM614_05968
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSIAM614_27433
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterSIAM614_24242

ゲノム配列情報

BioProject IDPRJNA18315
ローカスタグ
INSDC entriesAAUW01000000
ステータスWGS
解析状況
コンティグ数48
サイズ(bp) 6,561,391
遺伝子数 6,314
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Nitrate-dependent anaerobic carbon monoxide oxidation by aerobic CO-oxidizing bacteria. (FEMS Microbiol Ecol. 2006) PMID: 16542399

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
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gz		 TSV
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