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Microbe : Paenibacillus alvei

Microbe Description

NBRC No. 3343
Scientific name Paenibacillus alvei
Synonymous name Bacillus alvei
History IFO 3343 <- IMAB B-3-4 <- ATCC 6344 <- N.R. Smith, 662 <- A.G. Lochhead, 127
Other culture collection No. ATCC 6344=ATCC 8240=CCUG 1815=CIP 66.18=DSM 29=LMG 13253=NCCB 48008=NCIB 8198=NCIMB 9371=NRRL B-383=VKM B-502
Other No. 127=662=IMAB B-3-4
Reference
8085788
Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. (Antonie Van Leeuwenhoek. 1993)
8863428
A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov., and emended descriptions of P. lautus and of P. peoriae. (Int J Syst Bacteriol. 1996)
9103612
Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. (Int J Syst Bacteriol. 1997)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemasePAV_1c09740
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePAV_6c04160
Aminoglycoside resistance (by aminoglycoside O-nucleotidyltransferase)(NFUNC_0042)
RequireB
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePAV_9c01760
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinasePAV_9c01730
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class APAV_7c02290
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferasePAV_2c06560
TRPE
(NRULE_0143)
Anthranilate synthase component IPAV_3c05980
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginasePAV_2c02620
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductasePAV_11c01530
Arsenical resistance(NFUNC_0004)
RequireE
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBPAV_9c00320
ARSC2
(NRULE_0018)
Arsenate reductasePAV_9c00330
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphatasePAV_3c04450 PAV_7c01750 PAV_12c01140
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class APAV_7c02290
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthasePAV_1c04470
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferasePAV_1c05770
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDPAV_1c04830
BIOB
(NRULE_0185)
Biotin synthasePAV_1c04820
Fosfomycin resistance(NFUNC_0023)
RequireB
FOSB
(NRULE_0099)
Metallothiol transferase FosBPAV_6c03910
Human milk oligosaccharides metabolism(NFUNC_0083)
RequireA
LNBP
(NRULE_0112)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylasePAV_3c02040
Participant 
GALE
(NRULE_0111)
UDP-glucose 4-epimerasePAV_4c02470 PAV_2c01230
Kanamycin resistance(NFUNC_0052)
RequireA
ANT4
(NRULE_0152)
Kanamycin nucleotidyltransferasePAV_9c01760
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferasePAV_6c04160
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esterasePAV_2c03440 PAV_1c02750 PAV_7c02280
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinPAV_2c07670
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPAV_5c04320 PAV_4c05980 PAV_4c02520 PAV_1c04910 PAV_1c04670 PAV_1c04080 PAV_6c01760 PAV_6c01800 PAV_7c00970 PAV_10c00190 PAV_10c00480 PAV_11c01350
D
MNTR
(NRULE_0327)
DtxR family transcriptional regulator MntRPAV_3c04500
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinPAV_1c04670 PAV_1c04080 PAV_1c04910 PAV_4c02520 PAV_4c05980 PAV_5c04320 PAV_6c01760 PAV_6c01800 PAV_7c00970 PAV_10c00190 PAV_10c00480 PAV_11c01350
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinPAV_5c04350
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylasePAV_3c06400
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferasePAV_3c06380
PANE
(NRULE_0117)
2-dehydropantoate 2-reductasePAV_4c05090
PANC
(NRULE_0118)
Pantothenate synthetasePAV_3c06390
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class APAV_7c02290
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthasePAV_3c05350
RIBA
(NRULE_0201)
GTP cyclohydrolase-2PAV_3c05350 PAV_1c08520
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDPAV_1c08510 PAV_3c05330
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthasePAV_3c05360
RIBE
(NRULE_0204)
Riboflavin synthasePAV_3c05340
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFPAV_8c02210
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinasePAV_9c01730
Tyramine biosynthesis(NFUNC_0079)
RequireA
TYRDC
(NRULE_0248)
Pyridoxal-dependent tyrosine decarboxylasePAV_1c09980
Participant 
TYRP
(NRULE_0249)
Tyrosine permeasePAV_1c09990
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinPAV_4c02690
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinPAV_4c02700
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinPAV_5c04020 PAV_4c02710
C
BCCT
(NRULE_0220)
BCCT family transporterPAV_3c00740
E
OPUE
(NRULE_0222)
Sodium/proline symporterPAV_8c01050
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSPAV_2c06730
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTPAV_2c06740

Genomic Overview

BioProject IDPRJNA170044
Locus_tag
INSDC entriesAMBZ01000000
Sequence statusWGS
Current status
Contig number25
Size(bp) 6,834,602
Gene 6,605
Finishing goal
Assembly methodNewbler v. 2.6
Coverage17.8x
Technology
  • 454
  • Sanger
Reference
  • Genome sequence of Paenibacillus alvei DSM 29, a secondary invader during European foulbrood outbreaks. (J Bacteriol. 2012) PMID: 23105091

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
gz
FASTA
gz
FASTA
gz
TSV
uncompressed
2.0 MB 1.8 MB 1.2 MB 531.4 KB