Alanine racemization(NFUNC_0063) |
必須 | A | ALR (NRULE_0228) | Alanine racemase | PP_5269 PP_3722 |
Alginate degradation(NFUNC_0062) |
必須 | A | ALGL (NRULE_0226) | Alginate lyase | PP_1281 |
B | ALY (NRULE_0227) | Alginate lyase | PP_3774 |
Anthranilate biosynthesis(NFUNC_0038) |
必須 | A | GLAT (NRULE_0142) | Glutamine amidotransferase | PP_0420 |
TRPE (NRULE_0143) | Anthranilate synthase component I | PP_0417 |
Aromatic azo compounds degradation(NFUNC_0073) |
必須 | A | AZOR (NRULE_0236) | FMN-dependent NADH-azoreductase | PP_4538 PP_2866 |
Arsenical resistance(NFUNC_0004) |
必須 | A | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | PP_2717 PP_1929 |
ARSC1 (NRULE_0017) | Arsenate reductase | PP_1645 |
B | ARSB1 (NRULE_0015) | Arsenical pump membrane protein | PP_1929 PP_2717 |
ARSC2 (NRULE_0018) | Arsenate reductase | PP_2716 PP_1928 |
任意 | | ARSH (NRULE_0021) | ArsH protein | PP_1927 PP_2715 |
Bacitracin resistance(NFUNC_0022) |
必須 | A | UPPP (NRULE_0097) | Undecaprenyl-diphosphatase | PP_2862 |
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017) |
必須 | A | BENA (NRULE_0046) | Benzoate 1,2-dioxygenase alpha subunit | PP_3161 |
BENB (NRULE_0047) | Benzoate 1,2-dioxygenase beta subunit | PP_3162 |
BEND (NRULE_0082) | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase | PP_3164 |
任意 | | BENC (NRULE_0055) | Benzoate 1,2-dioxygenase electron transfer component | PP_3163 |
| FDR1 (NRULE_0032) | Oxygenase electron transfer component | PP_3163 PP_2641 PP_1163 PP_0899 PP_5212 PP_0316 PP_3737 PP_3274 |
| FDX1 (NRULE_0034) | Putative Rieske-type ferredoxin | PP_5373 PP_0315 PP_1317 PP_3161 PP_3175 PP_3198 PP_3212 PP_3736 PP_4690 |
Beta-lactam antibiotic resistance(NFUNC_0033) |
必須 | C | BLAC (NRULE_0124) | Beta-lactamase class C | PP_2876 |
Betaine biosynthesis (from choline)(NFUNC_0049) |
必須 | A | BETA (NRULE_0175) | Choline dehydrogenase | PP_5064 |
Bioplastic degradation(NFUNC_0015) |
必須 | C | PHAZ3 (NRULE_0088) | Poly(3-hydroxyalkanoate) depolymerase | PP_5004 |
Bioplastic synthesis(NFUNC_0001) |
必須 | A | PHAC1 (NRULE_0010) | Poly(3-hydroxyalkanoate) polymerase | PP_5003 PP_5005 |
任意 | | PHAF (NRULE_0377) | Phasin PhaF | PP_5007 |
| PHAI (NRULE_0378) | Phasin PhaI | PP_5008 |
Biotin biosynthesis(NFUNC_0051) |
必須 | A | BIOF (NRULE_0182) | 8-amino-7-oxononanoate synthase | PP_0363 |
BIOA (NRULE_0183) | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | PP_4984 |
BIOD (NRULE_0184) | ATP-dependent dethiobiotin synthetase BioD | PP_0366 |
BIOB (NRULE_0185) | Biotin synthase | PP_0362 |
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013) |
必須 | A | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | PP_3713 PP_3166 |
CATB2 (NRULE_0053) | (Chloro)muconate cycloisomerase | PP_3715 |
CATC (NRULE_0054) | Muconolactone isomerase | PP_3714 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | PP_1380 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | PP_3951 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | PP_3952 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | PP_1377 PP_3280 |
B | CATA (NRULE_0052) | Catechol 1,2-dioxygenase | PP_3713 PP_3166 |
CATC (NRULE_0054) | Muconolactone isomerase | PP_3714 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | PP_1380 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | PP_3951 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | PP_3952 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | PP_1377 PP_3280 |
CATB1 (NRULE_0386) | Muconate cycloisomerase | PP_3715 |
Cephalosporin resistance(NFUNC_0048) |
必須 | A | BLAC (NRULE_0124) | Beta-lactamase class C | PP_2876 |
Folate biosynthesis(NFUNC_0044) |
必須 | B | GLAT (NRULE_0142) | Glutamine amidotransferase | PP_0420 |
DHPS (NRULE_0144) | Dihydropteroate synthase | PP_4717 |
FOLA (NRULE_0147) | Dihydrofolate reductase | PP_5132 |
FOLB (NRULE_0158) | Dihydroneopterin aldolase | PP_0392 |
FOLK (NRULE_0159) | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase | PP_4698 PP_0393 |
FOLC (NRULE_0160) | Bifunctional protein FolC | PP_1997 |
PABB (NRULE_0161) | Para-aminobenzoate synthase component I | PP_2329 |
PABC (NRULE_0162) | Aminodeoxychorismate lyase | PP_1917 |
Macrolide antibiotic resistance(NFUNC_0045) |
必須 | B | RLMA (NRULE_0165) | 23S rRNA (guanine-N(1))-methyltransferase | PP_1524 |
D | ERE (NRULE_0168) | Erythromycin esterase | PP_3231 |
Metal-binding protein(NFUNC_0105) |
必須 | A | MOP (NRULE_0322) | Putative molybdenum-binding protein | PP_0241 PP_0360 PP_3830 PP_1018 |
B | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | PP_0360 |
C | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | PP_3828 PP_3732 PP_4305 PP_4881 PP_3818 |
E | CUER (NRULE_0328) | Copper-responsive transcriptional regulator CueR | PP_0585 |
F | SOXR (NRULE_0329) | Redox-sensitive transcriptional activator SoxR | PP_2060 |
H | NIKR (NRULE_0331) | Nickel-responsive transcriptional regulator NikR | PP_3341 |
I | ISCR (NRULE_0332) | Rrf2 family transcriptional regulator IscR | PP_0841 |
J | SMTA (NRULE_0009) | Metallothionein | PP_3262 |
Metallothionein(NFUNC_0006) |
必須 | A | SMTA (NRULE_0009) | Metallothionein | PP_3262 |
Molybdate transport (ABC transporter)(NFUNC_0097) |
必須 | A | MODA (NRULE_0324) | Molybdate ABC transporter substrate-binding protein | PP_3732 PP_3828 PP_3818 PP_4881 PP_4305 |
任意 | | MODE (NRULE_0323) | Putative molybdate-dependent transcriptional regulator | PP_0360 |
| MODB (NRULE_0325) | Molybdate ABC transporter permease protein | PP_3829 |
| MODC (NRULE_0326) | Molybdate ABC transporter ATP-binding protein | PP_3830 |
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014) |
必須 | A | PCAG (NRULE_0066) | Protocatechuate 3,4-dioxygenase alpha subunit | PP_4655 |
PCAH (NRULE_0067) | Protocatechuate 3,4-dioxygenase beta subunit | PP_4656 |
PCAB (NRULE_0068) | 3-carboxy-cis,cis-muconate cycloisomerase | PP_1379 |
PCAC (NRULE_0069) | 4-carboxymuconolactone decarboxylase | PP_1381 |
PCAD (NRULE_0070) | 3-oxoadipate enol-lactonase | PP_1380 |
PCAI (NRULE_0072) | 3-oxoadipate CoA-transferase subunit A | PP_3951 |
PCAJ (NRULE_0073) | 3-oxoadipate CoA-transferase subunit B | PP_3952 |
PCAF (NRULE_0074) | Beta-ketoadipyl-CoA thiolase | PP_1377 PP_3280 |
Pyrroloquinoline quinone biosynthesis(NFUNC_0020) |
必須 | A | PQQC (NRULE_0092) | Pyrroloquinoline-quinone synthase | PP_0378 |
任意 | | PQQA (NRULE_0090) | Coenzyme PQQ synthesis protein A | PP_0380 |
| PQQB (NRULE_0091) | Coenzyme PQQ synthesis protein B | PP_0379 |
| PQQD (NRULE_0093) | Coenzyme PQQ synthesis protein D | PP_0377 PP_2681 |
| PQQE (NRULE_0094) | Coenzyme PQQ synthesis protein E | PP_0376 |
| PQQF (NRULE_0095) | Coenzyme PQQ synthesis protein F | PP_0381 |
Riboflavin biosynthesis(NFUNC_0058) |
必須 | A | RIBB (NRULE_0200) | 3,4-dihydroxy-2-butanone 4-phosphate synthase | PP_3813 PP_0530 PP_0516 |
RIBA (NRULE_0201) | GTP cyclohydrolase-2 | PP_0522 PP_3813 PP_0516 |
RIBD (NRULE_0202) | Riboflavin biosynthesis protein RibD | PP_0514 |
RIBH (NRULE_0203) | 6,7-dimethyl-8-ribityllumazine synthase | PP_0517 |
RIBE (NRULE_0204) | Riboflavin synthase | PP_0515 PP_2916 |
任意 | | RIBF (NRULE_0205) | Riboflavin biosynthesis protein RibF | PP_0602 |
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037) |
必須 | A | TREY (NRULE_0140) | Maltooligosyl trehalose synthase | PP_4053 |
TREZ (NRULE_0141) | Malto-oligosyltrehalose trehalohydrolase | PP_4051 |
任意 | | GLGX (NRULE_0139) | Glycogen debranching enzyme | PP_4055 |
Trehalose biosynthesis (from maltose)(NFUNC_0034) |
必須 | B | TRES (NRULE_0128) | Trehalose synthase | PP_4059 |
Uptake of osmoprotectant(NFUNC_0061) |
必須 | B | EHUB (NRULE_0216) | Ectoine ABC transporter substrate-binding protein | PP_4428 |
EHUC (NRULE_0217) | Ectoine ABC transporter permease protein | PP_4427 |
EHUD (NRULE_0218) | Ectoine ABC transporter permease protein | PP_4426 |
EHUA (NRULE_0219) | Ectoine ABC transporter ATP-binding protein | PP_4425 |
C | BCCT (NRULE_0220) | BCCT family transporter | PP_5374 PP_5061 PP_3957 PP_3628 PP_0229 |
D | PROP (NRULE_0221) | Osmoprotectant transporter | PP_2914 |
E | OPUE (NRULE_0222) | Sodium/proline symporter | PP_4946 |