English site

微生物 : Rhodococcus erythropolis

微生物株情報

NBRC番号 100887
学名 Rhodococcus erythropolis
別名（シノニム） Arthrobacter picolinophilus
Nocardia calcarea
由来 Marine Biotechnol. Inst. (S. Harayama, PR4)
他保存機関番号
他株番号 PR4
参考文献
該当データなし

推定保有機能 >>詳細

Download
タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseRER_19140
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153RER_pREL1-02830 RER_pREL1-02600
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseRER_54580 RER_24030 RER_21620 RER_07460
任意 
RUBA
(NRULE_0039)
RubredoxinRER_07470 RER_21640 RER_21630 RER_07480
 
RUBB
(NRULE_0040)
Rubredoxin reductaseRER_07490
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRER_57010 RER_51130 RER_13800 RER_35970 RER_09150 RER_07540 RER_pREL1-01130
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseRER_00270 RER_18480
TRPE
(NRULE_0143)
Anthranilate synthase component IRER_33560
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRER_13480
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRER_35200 RER_pREL1-01590
ARSC1
(NRULE_0017)
Arsenate reductaseRER_43750
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseRER_pREL1-01650
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDRER_pREL1-01640
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRER_32020
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
必須A
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRER_54220
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_52840 RER_18360
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52080 RER_52910
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_18360 RER_52840
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
CATB1
(NRULE_0386)
Muconate cycloisomeraseRER_54220
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_18360 RER_52840
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
CATB1
(NRULE_0386)
Muconate cycloisomeraseRER_54220
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRER_54220
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_52850 RER_12090
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_52840 RER_18360
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseRER_37860
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseRER_37850
ECTC
(NRULE_0188)
L-ectoine synthaseRER_37870
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseRER_35380
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseRER_41620
D
ERE
(NRULE_0168)
Erythromycin esteraseRER_45200
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseRER_10510
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRER_17930 RER_37530 RER_46690 RER_46720 RER_59040
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRER_18370 RER_38730 RER_44420 RER_46710
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRER_43780 RER_55040
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRER_18370 RER_46710 RER_38730 RER_44420
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRER_46700
Nitrile hydratase(NFUNC_0002)
必須A
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaRER_59240
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaRER_59250
任意 
COBW
(NRULE_0007)
CobW/P47K family proteinRER_14090 RER_44020 RER_59260 RER_23350
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseRER_54270
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseRER_pREL1-02840 RER_07950 RER_pREL1-02610
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRER_21780 RER_55460 RER_46640 RER_38520 RER_00070 RER_17750
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRER_35970 RER_51130 RER_57010 RER_pREL1-01130 RER_07540 RER_13800 RER_09150
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRER_17030 RER_05840 RER_07580 RER_10610 RER_13750 RER_45910 RER_48660 RER_54260
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
必須A
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRER_52870
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRER_52860
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRER_52880
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRER_52890
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_52840 RER_18360
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52080 RER_52910
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRER_52870
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRER_52860
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRER_52880
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_52850 RER_12090
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_18360 RER_52840
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseRER_35070
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseRER_35240
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRER_23610 RER_35060
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRER_12840 RER_09680
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRER_07050 RER_34080 RER_29400
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterRER_43710 RER_05440
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSRER_29090
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTRER_29150

ゲノム配列情報

BioProject IDPRJDA20395
ローカスタグRER
INSDC entriesAP008957
ステータスComplete
解析状況
コンティグ数4
サイズ(bp) 6,895,538
遺伝子数 6,437
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4. (Environ Microbiol. 2006) PMID: 16423019

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
2.0 MB 1.9 MB 1.3 MB 498.9 KB