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Microbe : Rhodococcus erythropolis

Microbe Description

NBRC No. 100887
Scientific name Rhodococcus erythropolis
Synonymous name Arthrobacter picolinophilus
Nocardia calcarea
History Marine Biotechnol. Inst. (S. Harayama, PR4)
Other culture collection No.
Other No. PR4
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseRER_19140
n-alkane hydroxylation(NFUNC_0008)
RequireA
CYP153
(NRULE_0041)
Cytochrome P450 CYP153RER_pREL1-02830 RER_pREL1-02600
B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseRER_54580 RER_24030 RER_21620 RER_07460
Participant 
RUBA
(NRULE_0039)
RubredoxinRER_07470 RER_21640 RER_21630 RER_07480
 
RUBB
(NRULE_0040)
Rubredoxin reductaseRER_07490
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRER_57010 RER_51130 RER_13800 RER_35970 RER_09150 RER_07540 RER_pREL1-01130
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseRER_00270 RER_18480
TRPE
(NRULE_0143)
Anthranilate synthase component IRER_33560
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRER_13480
Arsenical resistance(NFUNC_0004)
RequireD
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBRER_35200 RER_pREL1-01590
ARSC1
(NRULE_0017)
Arsenate reductaseRER_43750
Participant 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseRER_pREL1-01650
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDRER_pREL1-01640
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRER_32020
Catechol degradation (beta-ketoadipate pathway)(NFUNC_0013)
RequireA
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRER_54220
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_52840 RER_18360
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52080 RER_52910
B
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_18360 RER_52840
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
CATB1
(NRULE_0386)
Muconate cycloisomeraseRER_54220
C
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_18360 RER_52840
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
CATB1
(NRULE_0386)
Muconate cycloisomeraseRER_54220
D
CATA
(NRULE_0052)
Catechol 1,2-dioxygenaseRER_54230
CATB2
(NRULE_0053)
(Chloro)muconate cycloisomeraseRER_54220
CATC
(NRULE_0054)
Muconolactone isomeraseRER_54210
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_52850 RER_12090
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_52840 RER_18360
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
Ectoine biosynthesis(NFUNC_0056)
RequireA
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseRER_37860
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseRER_37850
ECTC
(NRULE_0188)
L-ectoine synthaseRER_37870
GABA biosynthesis(NFUNC_0066)
RequireA
GAD
(NRULE_0231)
Glutamate decarboxylaseRER_35380
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseRER_41620
D
ERE
(NRULE_0168)
Erythromycin esteraseRER_45200
F
MGT
(NRULE_0170)
Macrolide glycosyltransferaseRER_10510
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRER_17930 RER_37530 RER_46690 RER_46720 RER_59040
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRER_18370 RER_38730 RER_44420 RER_46710
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRER_43780 RER_55040
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRER_18370 RER_46710 RER_38730 RER_44420
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRER_46700
Nitrile hydratase(NFUNC_0002)
RequireA
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaRER_59240
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaRER_59250
Participant 
COBW
(NRULE_0007)
CobW/P47K family proteinRER_14090 RER_44020 RER_59260 RER_23350
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseRER_54270
Participant 
FDR2
(NRULE_0057)
Ferredoxin reductaseRER_pREL1-02840 RER_07950 RER_pREL1-02610
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentRER_21780 RER_55460 RER_46640 RER_38520 RER_00070 RER_17750
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinRER_35970 RER_51130 RER_57010 RER_pREL1-01130 RER_07540 RER_13800 RER_09150
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseRER_17030 RER_05840 RER_07580 RER_10610 RER_13750 RER_45910 RER_48660 RER_54260
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRER_52870
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRER_52860
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRER_52880
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRER_52890
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_12090 RER_52850
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_52840 RER_18360
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52080 RER_52910
B
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRER_52870
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRER_52860
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRER_52880
PCAL
(NRULE_0071)
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylaseRER_52890
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARER_52850 RER_12090
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRER_18360 RER_52840
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRER_52910 RER_52080
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseRER_35070
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseRER_35240
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRER_23610 RER_35060
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRER_12840 RER_09680
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRER_07050 RER_34080 RER_29400
Uptake of osmoprotectant(NFUNC_0061)
RequireC
BCCT
(NRULE_0220)
BCCT family transporterRER_43710 RER_05440
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
RequireA
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSRER_29090
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTRER_29150

Genomic Overview

BioProject IDPRJDA20395
Locus_tagRER
INSDC entriesAP008957
Sequence statusComplete
Current status
Contig number4
Size(bp) 6,895,538
Gene 6,437
Finishing goal
Assembly method
Coverage
Technology
Reference
  • Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4. (Environ Microbiol. 2006) PMID: 16423019

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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2.0 MB 1.9 MB 1.3 MB 498.9 KB