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微生物 : Escherichia hermannii

微生物株情報

NBRC番号 105704
学名 Escherichia hermannii
別名（シノニム） 該当データなし
由来 GTC 00347 <- GIFU 10612 <- ATCC 33650 <- CDC 980-72 <- Louisiana State Health Dept.
他保存機関番号 GTC 00347=GIFU 10612=ATCC 33650=DSM 4560=JCM 1473=BCRC 13982=CCUG 15714=CIP 103176=LMG 7867=NCTC 12129=HAMBI 1693=CIP 104946
他株番号 CDC 980-72=83024=82073
参考文献
7040466
Atypical biogroups of Escherichia coli found in clinical specimens and description of Escherichia hermannii sp. nov. (J Clin Microbiol. 1982)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseEH105704_21_00080 EH105704_28_00050
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AEH105704_10_00980
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEH105704_12_00100 EH105704_07_00260
TRPE
(NRULE_0143)
Anthranilate synthase component IEH105704_12_00110
Aromatic azo compounds degradation(NFUNC_0073)
必須A
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseEH105704_12_00760
Arsenical resistance(NFUNC_0004)
必須A
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinEH105704_06_01410 EH105704_33_00040
ARSC1
(NRULE_0017)
Arsenate reductaseEH105704_06_01400 EH105704_01_08790 EH105704_33_00030
任意 
ARSA
(NRULE_0014)
Arsenical pump-driving ATPaseEH105704_33_00050
 
ARSD
(NRULE_0020)
Arsenical resistance operon trans-acting repressor ArsDEH105704_33_00060
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseEH105704_19_00120
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AEH105704_10_00980
Biotin biosynthesis(NFUNC_0051)
必須A
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseEH105704_23_00130
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseEH105704_23_00150
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDEH105704_23_00110 EH105704_05_02150
BIOB
(NRULE_0185)
Biotin synthaseEH105704_23_00140
Chloramphenicol resistance(NFUNC_0025)
必須A
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseEH105704_16_00330
Folate biosynthesis(NFUNC_0044)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseEH105704_12_00100 EH105704_07_00260
DHPS
(NRULE_0144)
Dihydropteroate synthaseEH105704_02_01930
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMEH105704_05_00380
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEH105704_01_07480 EH105704_19_00110
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEH105704_09_00550
FOLC
(NRULE_0160)
Bifunctional protein FolCEH105704_01_07590
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEH105704_01_03030
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEH105704_03_02500
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseEH105704_07_00260 EH105704_12_00100
DHPS
(NRULE_0144)
Dihydropteroate synthaseEH105704_02_01930
FOLA
(NRULE_0147)
Dihydrofolate reductaseEH105704_02_03010
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseEH105704_01_07480 EH105704_19_00110
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseEH105704_09_00550
FOLC
(NRULE_0160)
Bifunctional protein FolCEH105704_01_07590
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IEH105704_01_03030
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseEH105704_03_02500
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseEH105704_01_03140
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAEH105704_01_04950
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBEH105704_01_06920 EH105704_01_04940
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinEH105704_23_00250 EH105704_23_00290
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEH105704_23_00290
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEH105704_23_00270 EH105704_21_00250 EH105704_20_00440 EH105704_08_01110 EH105704_01_08330
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueREH105704_29_00210
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxREH105704_02_00080
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntREH105704_27_00130
H
NIKR
(NRULE_0331)
Nickel-responsive transcriptional regulator NikREH105704_06_01910
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscREH105704_01_09190
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinEH105704_21_00250 EH105704_01_08330 EH105704_20_00440 EH105704_08_01110 EH105704_23_00270
任意 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorEH105704_23_00290
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinEH105704_23_00260
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinEH105704_23_00250
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseEH105704_09_00510
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseEH105704_09_00540
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseEH105704_01_09730 EH105704_02_04370
PANC
(NRULE_0118)
Pantothenate synthetaseEH105704_09_00520
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class AEH105704_10_00980
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseEH105704_19_00190
RIBA
(NRULE_0201)
GTP cyclohydrolase-2EH105704_12_00230
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDEH105704_10_00130
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseEH105704_10_00120
RIBE
(NRULE_0204)
Riboflavin synthaseEH105704_01_00320
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFEH105704_02_02700
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseEH105704_10_00890
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseEH105704_10_00900
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeEH105704_10_00880 EH105704_07_00840
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseEH105704_01_03970
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseEH105704_01_03980
Uptake of osmoprotectant(NFUNC_0061)
必須A
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinEH105704_15_00130
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinEH105704_15_00140
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinEH105704_15_00150 EH105704_05_01020
C
BCCT
(NRULE_0220)
BCCT family transporterEH105704_06_01920
D
PROP
(NRULE_0221)
Osmoprotectant transporterEH105704_12_00830
E
OPUE
(NRULE_0222)
Sodium/proline symporterEH105704_01_04060
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
必須A
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseEH105704_02_03810
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseEH105704_01_07640
SERC
(NRULE_0210)
Phosphoserine aminotransferaseEH105704_01_04740
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseEH105704_02_03050 EH105704_09_00370
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseEH105704_18_00390

ゲノム配列情報

BioProject IDPRJDB14
ローカスタグEH105704
INSDC entriesBAFF00000000
ステータスWGS
解析状況HIGH_QUALITY_DRAFT
コンティグ数44
サイズ(bp) 4,495,280
遺伝子数 4,160
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • Roche 454
  • Illumina Hiseq1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.3 MB 1.3 MB 879.2 KB 367.4 KB