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Microbe : Enterobacter hormaechei

Microbe Description

NBRC No. 105718
Scientific name Enterobacter hormaechei
Synonymous name Not assigned
History GTC 01318 <- ATCC 49162 <- C.M. O'Hara <- San Francisco Gen. Hosp.
Other culture collection No. ATCC 49162=CCUG 27126=CIP 103441=GTC 01318
Other No.
Reference
Not assigned

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseHMPREF9086_2156 HMPREF9086_2738
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF9086_4208 HMPREF9086_2616
TRPE
(NRULE_0143)
Anthranilate synthase component IHMPREF9086_2615
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseHMPREF9086_2280
Arsenical resistance(NFUNC_0004)
RequireA
ARSB1
(NRULE_0015)
Arsenical pump membrane proteinHMPREF9086_2609
ARSC1
(NRULE_0017)
Arsenate reductaseHMPREF9086_1004 HMPREF9086_2608 HMPREF9086_3318
Participant 
ARSH
(NRULE_0021)
ArsH proteinHMPREF9086_2611
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseHMPREF9086_3896
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireC
BLAC
(NRULE_0124)
Beta-lactamase class CHMPREF9086_2076
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseHMPREF9086_1260
Biotin biosynthesis(NFUNC_0051)
RequireA
BIOF
(NRULE_0182)
8-amino-7-oxononanoate synthaseHMPREF9086_1084
BIOA
(NRULE_0183)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferaseHMPREF9086_1086
BIOD
(NRULE_0184)
ATP-dependent dethiobiotin synthetase BioDHMPREF9086_1082 HMPREF9086_0368
BIOB
(NRULE_0185)
Biotin synthaseHMPREF9086_1085
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CHMPREF9086_2076
Chloramphenicol resistance(NFUNC_0025)
RequireA
CAT1
(NRULE_0107)
Chloramphenicol acetyltransferaseHMPREF9086_0356
Folate biosynthesis(NFUNC_0044)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF9086_2616 HMPREF9086_4208
DHPS
(NRULE_0144)
Dihydropteroate synthaseHMPREF9086_4036
FOLM
(NRULE_0146)
Dihydrofolate reductase FolMHMPREF9086_0413
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseHMPREF9086_3219 HMPREF9086_3897
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseHMPREF9086_1687
FOLC
(NRULE_0160)
Bifunctional protein FolCHMPREF9086_3231
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IHMPREF9086_2757
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseHMPREF9086_0761
B
GLAT
(NRULE_0142)
Glutamine amidotransferaseHMPREF9086_2616 HMPREF9086_4208
DHPS
(NRULE_0144)
Dihydropteroate synthaseHMPREF9086_4036
FOLA
(NRULE_0147)
Dihydrofolate reductaseHMPREF9086_1783 HMPREF9086_4599
FOLB
(NRULE_0158)
Dihydroneopterin aldolaseHMPREF9086_3897 HMPREF9086_3219
FOLK
(NRULE_0159)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinaseHMPREF9086_1687
FOLC
(NRULE_0160)
Bifunctional protein FolCHMPREF9086_3231
PABB
(NRULE_0161)
Para-aminobenzoate synthase component IHMPREF9086_2757
PABC
(NRULE_0162)
Aminodeoxychorismate lyaseHMPREF9086_0761
4-hydroxyphenylacetate degradation(NFUNC_0068)
RequireA
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentHMPREF9086_1894
HPAC
(NRULE_0102)
4-hydroxyphenylacetate 3-monooxygenase reductase componentHMPREF9086_1895
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseHMPREF9086_1888
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseHMPREF9086_1887
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseHMPREF9086_1889
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseHMPREF9086_1886
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseHMPREF9086_1890
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseHMPREF9086_1891
C
HPAB1
(NRULE_0085)
4-hydroxyphenylacetate 3-monooxygenase oxygenase componentHMPREF9086_1894
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseHMPREF9086_2461 HMPREF9086_0843 HMPREF9086_1214 HMPREF9086_1895
HPAD1
(NRULE_0193)
Homoprotocatechuate 2,3-dioxygenaseHMPREF9086_1888
HPAE
(NRULE_0195)
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseHMPREF9086_1887
HPAF
(NRULE_0196)
5-carboxymethyl-2-hydroxymuconate Delta-isomeraseHMPREF9086_1889
HPAG
(NRULE_0197)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase/2-hydroxyhepta-2,4-diene-1,7-dioate Delta-isomeraseHMPREF9086_1886
HPAH
(NRULE_0198)
2-oxo-hepta-3-ene-1,7-dioate hydrataseHMPREF9086_1890
HPAI
(NRULE_0199)
2,4-dihydroxyhept-2-ene-1,7-dioate aldolaseHMPREF9086_1891
Macrolide antibiotic resistance(NFUNC_0045)
RequireB
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseHMPREF9086_2767
C
MACA
(NRULE_0166)
Macrolide-specific efflux protein MacAHMPREF9086_0946
MACB
(NRULE_0167)
Macrolide export ATP-binding/permease protein MacBHMPREF9086_0945
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinHMPREF9086_1100 HMPREF9086_1096 HMPREF9086_3523
B
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorHMPREF9086_1100
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF9086_1098 HMPREF9086_3290 HMPREF9086_2978 HMPREF9086_0130
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRHMPREF9086_1403
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRHMPREF9086_2146
G
ZNTR
(NRULE_0330)
Zinc-responsive transcriptional regulator ZntRHMPREF9086_4145
I
ISCR
(NRULE_0332)
Rrf2 family transcriptional regulator IscRHMPREF9086_3389
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinHMPREF9086_3290 HMPREF9086_2978 HMPREF9086_1098 HMPREF9086_0130
Participant 
MODE
(NRULE_0323)
Putative molybdate-dependent transcriptional regulatorHMPREF9086_1100
 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinHMPREF9086_1097
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinHMPREF9086_1096
(R)-pantothenate biosynthesis(NFUNC_0030)
RequireA
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseHMPREF9086_1690
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseHMPREF9086_1688
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseHMPREF9086_1275 HMPREF9086_1480
PANC
(NRULE_0118)
Pantothenate synthetaseHMPREF9086_1689
Phenol degradation(NFUNC_0028)
RequireB
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseHMPREF9086_1894
Participant 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentHMPREF9086_0952 HMPREF9086_0308 HMPREF9086_1610
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinHMPREF9086_3799 HMPREF9086_3801
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseHMPREF9086_0843 HMPREF9086_2461 HMPREF9086_1214 HMPREF9086_1895
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
RequireA
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseHMPREF9086_0390
Participant 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BHMPREF9086_0389
 
PQQD
(NRULE_0093)
Coenzyme PQQ synthesis protein DHMPREF9086_0391
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein EHMPREF9086_0392
 
PQQF
(NRULE_0095)
Coenzyme PQQ synthesis protein FHMPREF9086_0393
Riboflavin biosynthesis(NFUNC_0058)
RequireA
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseHMPREF9086_3889
RIBA
(NRULE_0201)
GTP cyclohydrolase-2HMPREF9086_2588
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDHMPREF9086_1490
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseHMPREF9086_1489 HMPREF9086_1591
RIBE
(NRULE_0204)
Riboflavin synthaseHMPREF9086_0516
Participant 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFHMPREF9086_1805
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseHMPREF9086_2407
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseHMPREF9086_2408
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeHMPREF9086_4261 HMPREF9086_2406
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseHMPREF9086_2897
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseHMPREF9086_2898
Uptake of osmoprotectant(NFUNC_0061)
RequireA
OPUAC
(NRULE_0213)
Osmoprotectant ABC transporter substrate-binding proteinHMPREF9086_3565
OPUAB
(NRULE_0214)
Osmoprotectant ABC transporter permease proteinHMPREF9086_3564
OPUAA
(NRULE_0215)
Osmoprotectant ABC transporter ATP-binding proteinHMPREF9086_0364 HMPREF9086_3563
C
BCCT
(NRULE_0220)
BCCT family transporterHMPREF9086_2262 HMPREF9086_1257
D
PROP
(NRULE_0221)
Osmoprotectant transporterHMPREF9086_2102
E
OPUE
(NRULE_0222)
Sodium/proline symporterHMPREF9086_0834
Vitamin B6 biosynthesis (PdxA/PdxJ pathway)(NFUNC_0060)
RequireA
EPD
(NRULE_0208)
D-erythrose-4-phosphate dehydrogenaseHMPREF9086_3785
PDXB
(NRULE_0209)
Erythronate-4-phosphate dehydrogenaseHMPREF9086_3236
SERC
(NRULE_0210)
Phosphoserine aminotransferaseHMPREF9086_0917
PDXA
(NRULE_0211)
4-hydroxythreonine-4-phosphate dehydrogenaseHMPREF9086_1779
PDXJ
(NRULE_0212)
Pyridoxine 5'-phosphate synthaseHMPREF9086_3413

Genomic Overview

BioProject IDPRJNA53031
Locus_tagHMPREF9086
INSDC entriesAFHR01000000
Sequence statusWGS
Current statusStandard Draft
Contig number84
Size(bp) 4,806,970
Gene 4,671
Finishing goalStandard Draft
Assembly methodNewbler Assembler v. 2.3-04192010
Coverage23.34x
Technology
  • 454
Reference

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.4 MB 1.4 MB 938.5 KB 414.1 KB