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微生物 : Gordonia aichiensis

微生物株情報

NBRC番号 108223
学名 Gordonia aichiensis
別名(シノニム) Gordona aichiensis (sic)
Rhodococcus aichiense (sic)
Rhodococcus aichiensis
由来 IFM 0473 <- Osaka City Univ. (I. Yano, 62001)
他保存機関番号 IFM 0473=ATCC 33611=CIP 104184=DSM 43978=NBRC 16046=JCM 6046=NRRL B-16934=KCTC 9808=PCM 2573
他株番号 E9028=62001
参考文献
7981103
Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amarae comb. nov. (Int J Syst Bacteriol. 1994)

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGOACH_06_02000
n-alkane hydroxylation(NFUNC_0008)
必須B
ALKB
(NRULE_0024)
Alkane 1-monooxygenaseGOACH_03_00340 GOACH_04_01410
任意 
RUBA
(NRULE_0039)
RubredoxinGOACH_04_01410
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOACH_11_00500 GOACH_07_01240 GOACH_07_00580 GOACH_04_00620 GOACH_04_00590 GOACH_04_04180 GOACH_04_03950 GOACH_28_00150 GOACH_29_00260 GOACH_16_00370 GOACH_12_00030 GOACH_12_00040
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGOACH_15_00480
TRPE
(NRULE_0143)
Anthranilate synthase component IGOACH_30_00300
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGOACH_18_01080 GOACH_33_00040
ARSC1
(NRULE_0017)
Arsenate reductaseGOACH_13_00390
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGOACH_05_02900 GOACH_17_00280
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGOACH_07_01240
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGOACH_07_01230
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGOACH_07_01220
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGOACH_07_01220
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOACH_11_01010 GOACH_03_03850 GOACH_03_02480 GOACH_07_00610 GOACH_07_01220 GOACH_11_00510 GOACH_12_00500 GOACH_15_00100 GOACH_15_00240 GOACH_17_00870 GOACH_21_00340 GOACH_28_00210 GOACH_29_00240
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOACH_29_00260 GOACH_04_03950 GOACH_04_04180 GOACH_04_00590 GOACH_04_00620 GOACH_07_00580 GOACH_07_01240 GOACH_11_00500 GOACH_12_00040 GOACH_12_00030 GOACH_16_00370 GOACH_28_00150
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOACH_19_00860 GOACH_03_02440 GOACH_12_00050
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGOACH_11_00600
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOACH_17_00380
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOACH_17_00390
ECTC
(NRULE_0188)
L-ectoine synthaseGOACH_17_00370
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGOACH_04_00800
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseGOACH_01_00510
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGOACH_17_00380
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGOACH_17_00390
 
ECTC
(NRULE_0188)
L-ectoine synthaseGOACH_17_00370
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGOACH_03_06130
Mercury resistance(NFUNC_0005)
必須A
MERA
(NRULE_0008)
Mercuric reductaseGOACH_33_00270 GOACH_45_00050
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGOACH_23_00730 GOACH_03_03920 GOACH_58_00460 GOACH_23_00760
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOACH_58_00430 GOACH_23_00740 GOACH_03_03150
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGOACH_34_00070
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGOACH_58_00430 GOACH_23_00740 GOACH_03_03150
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGOACH_23_00750
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseGOACH_01_01800
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseGOACH_16_00040
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseGOACH_14_00100
PANC
(NRULE_0118)
Pantothenate synthetaseGOACH_01_01790
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGOACH_06_00840
C
PHEA2
(NRULE_0084)
Aromatic ring hydroxylaseGOACH_22_00900 GOACH_01_01900
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGOACH_03_02440 GOACH_12_00050 GOACH_19_00860
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGOACH_11_01010 GOACH_03_03850 GOACH_03_02480 GOACH_07_00610 GOACH_07_01220 GOACH_11_00510 GOACH_12_00500 GOACH_15_00100 GOACH_15_00240 GOACH_17_00870 GOACH_21_00340 GOACH_28_00210 GOACH_29_00240
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGOACH_04_03950 GOACH_07_01240 GOACH_29_00260 GOACH_28_00150 GOACH_16_00370 GOACH_11_00500 GOACH_12_00040 GOACH_12_00030 GOACH_07_00580 GOACH_04_00620 GOACH_04_00590 GOACH_04_04180
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGOACH_06_00830 GOACH_18_00230 GOACH_07_00330 GOACH_07_00660 GOACH_29_00230 GOACH_04_04210 GOACH_01_00610 GOACH_01_00370 GOACH_01_01860 GOACH_29_00280
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGOACH_16_01130
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGOACH_16_01030
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGOACH_16_01140 GOACH_58_01030
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGOACH_04_03210
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGOACH_04_03200
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGOACH_11_00570
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGOACH_05_01320
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGOACH_05_01370

ゲノム配列情報

BioProject IDPRJDB402
ローカスタグGOACH
INSDC entriesBANR00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数78
サイズ(bp) 5,092,029
遺伝子数 4,613
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
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FASTA
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