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微生物 : Gordonia namibiensis

微生物株情報

NBRC番号 108229
学名 Gordonia namibiensis
別名（シノニム） 該当データなし
由来 IFM 10356 <- JCM 12074 <- NCIMB 13800 <- M. Goodfellow, NAM-BN063A
他保存機関番号 IFM 10356=DSM 44568=JCM 12074=BCRC 16392=CCUG 47264=CIP 107614=KCTC 9952=NCIMB 13800
他株番号
参考文献
11876358
Gordonia namibiensis sp. nov., a novel nitrile metabolising actinomycete recovered from an African sand. (Syst Appl Microbiol. 2001)

推定保有機能 >>詳細

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseGONAM_10_02240
n-alkane hydroxylation(NFUNC_0008)
必須A
CYP153
(NRULE_0041)
Cytochrome P450 CYP153GONAM_02_01570
C
MMA
(NRULE_0027)
Multicomponent monooxygenase alpha subunitGONAM_19_00650 GONAM_19_00670
MMB
(NRULE_0028)
Multicomponent monooxygenase beta subunitGONAM_19_00670 GONAM_19_00650
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGONAM_54_00150 GONAM_06_01170 GONAM_07_00740 GONAM_10_01700 GONAM_11_00410 GONAM_19_00660 GONAM_19_00870 GONAM_25_00290 GONAM_35_00350 GONAM_61_00010
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGONAM_19_00680
任意 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGONAM_61_00150 GONAM_31_00120 GONAM_29_00270 GONAM_25_00310 GONAM_20_00460 GONAM_20_00120 GONAM_07_00730 GONAM_07_00390 GONAM_03_00230 GONAM_56_00210
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseGONAM_33_00100
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseGONAM_52_00520 GONAM_02_03280
TRPE
(NRULE_0143)
Anthranilate synthase component IGONAM_27_00160
Arsenical resistance(NFUNC_0004)
必須D
ARSB2
(NRULE_0016)
Arsenite resistance protein ArsBGONAM_02_01770
ARSC1
(NRULE_0017)
Arsenate reductaseGONAM_24_00050
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseGONAM_44_00310
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitGONAM_25_00310
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitGONAM_25_00300
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseGONAM_25_00290
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentGONAM_25_00290
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGONAM_10_01700 GONAM_06_01170 GONAM_07_00740 GONAM_11_00410 GONAM_19_00660 GONAM_19_00870 GONAM_25_00290 GONAM_35_00350 GONAM_54_00150 GONAM_61_00010
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGONAM_31_00120 GONAM_56_00210 GONAM_61_00150 GONAM_03_00230 GONAM_07_00390 GONAM_07_00730 GONAM_20_00120 GONAM_20_00460 GONAM_25_00310 GONAM_29_00270
 
FDR2
(NRULE_0057)
Ferredoxin reductaseGONAM_07_00850
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseGONAM_07_01270
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseGONAM_16_00910
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseGONAM_16_00920
ECTC
(NRULE_0188)
L-ectoine synthaseGONAM_16_00900
GABA biosynthesis(NFUNC_0066)
必須A
GAD
(NRULE_0231)
Glutamate decarboxylaseGONAM_15_00190
Macrolide antibiotic resistance(NFUNC_0045)
必須B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseGONAM_09_00110
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinGONAM_56_00720 GONAM_56_00750 GONAM_09_01500
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGONAM_09_01470 GONAM_56_00730
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRGONAM_23_00180
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinGONAM_09_01470 GONAM_56_00730
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinGONAM_56_00740
Phenol degradation(NFUNC_0028)
必須B
PHEA1
(NRULE_0083)
Aromatic ring hydroxylaseGONAM_24_00070
任意 
FDR2
(NRULE_0057)
Ferredoxin reductaseGONAM_07_00850
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentGONAM_06_01170 GONAM_19_00870 GONAM_25_00290 GONAM_35_00350 GONAM_54_00150 GONAM_61_00010 GONAM_11_00410 GONAM_10_01700 GONAM_07_00740 GONAM_19_00660
 
MME
(NRULE_0033)
Multicomponent monooxygenase effector proteinGONAM_19_00680
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinGONAM_03_00230 GONAM_61_00150 GONAM_56_00210 GONAM_31_00120 GONAM_29_00270 GONAM_25_00310 GONAM_20_00460 GONAM_20_00120 GONAM_07_00730 GONAM_07_00390
 
FADR1
(NRULE_0101)
NADH-dependent flavin reductaseGONAM_07_00360 GONAM_24_00080 GONAM_61_00640 GONAM_55_00090 GONAM_41_00050 GONAM_10_01690 GONAM_10_02390 GONAM_08_00500 GONAM_07_00640 GONAM_16_01250
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseGONAM_33_00100
Thiocyanate hydrolase(NFUNC_0003)
必須A
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGONAM_53_00370
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGONAM_53_00370
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGONAM_53_00360
B
SCNA
(NRULE_0003)
Thiocyanate hydrolase subunit alphaGONAM_53_00370
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGONAM_53_00360
C
SCNB
(NRULE_0004)
Thiocyanate hydrolase subunit betaGONAM_53_00370
SCNC
(NRULE_0005)
Thiocyanate hydrolase subunit gammaGONAM_53_00360
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
必須A
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseGONAM_46_00170
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseGONAM_46_00060
任意 
GLGX
(NRULE_0139)
Glycogen debranching enzymeGONAM_46_00180
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseGONAM_22_00270
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseGONAM_22_00280
Uptake of osmoprotectant(NFUNC_0061)
必須C
BCCT
(NRULE_0220)
BCCT family transporterGONAM_07_01250 GONAM_23_00230
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSGONAM_14_00160
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTGONAM_14_00110

ゲノム配列情報

BioProject IDPRJDB143
ローカスタグGONAM
INSDC entriesBAHE00000000
ステータスWGS
解析状況High-Quality Draft
コンティグ数67
サイズ(bp) 4,941,607
遺伝子数 4,446
フィニッシングゴールNoncontiguous Finished
アセンブル方法Newbler v. 2.6
冗長度
シーケンス方法
  • 454 GS-FLX Titanium
  • Illumina HiSeq 1000
参考文献

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
1.4 MB 1.4 MB 1.4 MB 337.9 KB