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微生物 : Saccharopolyspora erythraea

微生物株情報

NBRC番号 13426
学名 Saccharopolyspora erythraea
別名（シノニム） Streptomyces erythraeus
由来 IFO 13426 <- SAJ <- OWU (ISP 5517) <- Eli Lilly & Co. (M5-12559)
他保存機関番号 ATCC 11635=CBS 727.72=DSM 40517=HUT 6087=IAM 0045=ISP 5517=JCM 4026=JCM 4748=NBRC 12597=NCIB 8594=NCIMB 8594=NRRL 2338=RIA 1387=VKM Ac-1189
他株番号 KCC S-0748
参考文献
該当データなし

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タイプパターン 構成遺伝子 該当CDS
Alanine racemization(NFUNC_0063)
必須A
ALR
(NRULE_0228)
Alanine racemaseSACE_6764
D-allose biosynthesis(NFUNC_0077)
必須A
LRHI
(NRULE_0242)
L-rhamnose isomeraseSACE_4105
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
必須A
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseSACE_3603 SACE_3604
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
必須A
APH6
(NRULE_0155)
Streptomycin 6-kinaseSACE_6537 SACE_5997
Ampicillin resistance(NFUNC_0046)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASACE_1374
Anthranilate biosynthesis(NFUNC_0038)
必須A
GLAT
(NRULE_0142)
Glutamine amidotransferaseSACE_0040 SACE_4036
TRPE
(NRULE_0143)
Anthranilate synthase component ISACE_5753
Bacitracin resistance(NFUNC_0022)
必須A
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseSACE_3590
Benzoate degradation (via hydroxylation by dioxygenase)(NFUNC_0017)
必須A
BENA
(NRULE_0046)
Benzoate 1,2-dioxygenase alpha subunitSACE_4379
BENB
(NRULE_0047)
Benzoate 1,2-dioxygenase beta subunitSACE_4378
BEND
(NRULE_0082)
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenaseSACE_4377
任意 
BENC
(NRULE_0055)
Benzoate 1,2-dioxygenase electron transfer componentSACE_4377
 
FDR1
(NRULE_0032)
Oxygenase electron transfer componentSACE_3556 SACE_2477 SACE_2819 SACE_3548 SACE_4377
 
FDX1
(NRULE_0034)
Putative Rieske-type ferredoxinSACE_2470 SACE_3150 SACE_2821 SACE_4514 SACE_4512 SACE_4486 SACE_4379 SACE_4170 SACE_3272 SACE_1686 SACE_3146
 
FDR2
(NRULE_0057)
Ferredoxin reductaseSACE_2839
Beta-lactam antibiotic resistance(NFUNC_0033)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASACE_1374
Betaine biosynthesis (from choline)(NFUNC_0049)
必須C
CHOX
(NRULE_0178)
Choline oxidaseSACE_5373
Betaine biosynthesis (from glycine)(NFUNC_0050)
必須B
GSDMT
(NRULE_0181)
Glycine/sarcosine/dimethylglycine N-methyltransferaseSACE_3901
Bioplastic degradation(NFUNC_0015)
必須B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseSACE_3720
Ectoine biosynthesis(NFUNC_0056)
必須A
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSACE_0484
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSACE_0483
ECTC
(NRULE_0188)
L-ectoine synthaseSACE_0485
Hydroxyectoine biosynthesis(NFUNC_0057)
必須A
ECTD
(NRULE_0189)
Ectoine hydroxylaseSACE_0486
任意 
ECTB
(NRULE_0186)
Diaminobutyrate--2-oxoglutarate transaminaseSACE_0484
 
ECTA
(NRULE_0187)
L-2,4-diaminobutyric acid acetyltransferaseSACE_0483
 
ECTC
(NRULE_0188)
L-ectoine synthaseSACE_0485
Macrolide antibiotic resistance(NFUNC_0045)
必須A
ERM
(NRULE_0164)
rRNA adenine N-6-methyltransferaseSACE_0733
B
RLMA
(NRULE_0165)
23S rRNA (guanine-N(1))-methyltransferaseSACE_1994
D
ERE
(NRULE_0168)
Erythromycin esteraseSACE_5414 SACE_0712 SACE_1765
E
MPH
(NRULE_0169)
Macrolide 2'-phosphotransferaseSACE_0072
Metal-binding protein(NFUNC_0105)
必須A
MOP
(NRULE_0322)
Putative molybdenum-binding proteinSACE_4258 SACE_0570 SACE_0573
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSACE_0571
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRSACE_5764
Molybdate transport (ABC transporter)(NFUNC_0097)
必須A
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinSACE_0571
任意 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinSACE_0572
(R)-pantothenate biosynthesis(NFUNC_0030)
必須A
PAND
(NRULE_0115)
Aspartate 1-decarboxylaseSACE_0407
PANB
(NRULE_0116)
3-methyl-2-oxobutanoate hydroxymethyltransferaseSACE_1604
PANE
(NRULE_0117)
2-dehydropantoate 2-reductaseSACE_1860
PANC
(NRULE_0118)
Pantothenate synthetaseSACE_0406 SACE_5541
Penicillin resistance(NFUNC_0047)
必須A
BLAA
(NRULE_0122)
Beta-lactamase class ASACE_1374
Pyrroloquinoline quinone biosynthesis(NFUNC_0020)
必須A
PQQC
(NRULE_0092)
Pyrroloquinoline-quinone synthaseSACE_4446
任意 
PQQB
(NRULE_0091)
Coenzyme PQQ synthesis protein BSACE_4447
 
PQQE
(NRULE_0094)
Coenzyme PQQ synthesis protein ESACE_4425
Riboflavin biosynthesis(NFUNC_0058)
必須A
RIBB
(NRULE_0200)
3,4-dihydroxy-2-butanone 4-phosphate synthaseSACE_2786 SACE_2123
RIBA
(NRULE_0201)
GTP cyclohydrolase-2SACE_2884 SACE_2786 SACE_2123
RIBD
(NRULE_0202)
Riboflavin biosynthesis protein RibDSACE_2887
RIBH
(NRULE_0203)
6,7-dimethyl-8-ribityllumazine synthaseSACE_2124
RIBE
(NRULE_0204)
Riboflavin synthaseSACE_2122
任意 
RIBF
(NRULE_0205)
Riboflavin biosynthesis protein RibFSACE_5918
Streptogramin resistance(NFUNC_0027)
必須B
VGB
(NRULE_0114)
Virginiamycin B lyaseSACE_3383
Streptomycin resistance(NFUNC_0054)
必須C
APH6
(NRULE_0155)
Streptomycin 6-kinaseSACE_6537 SACE_5997
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
必須A
TPS
(NRULE_0119)
Trehalose-phosphate synthaseSACE_0462
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseSACE_3700 SACE_2447 SACE_0461
Uptake of osmoprotectant(NFUNC_0061)
必須B
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinSACE_6269
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinSACE_6268
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinSACE_6267
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinSACE_6266
C
BCCT
(NRULE_0220)
BCCT family transporterSACE_0076 SACE_0827 SACE_2490 SACE_4487 SACE_4607
Vitamin B6 biosynthesis (PdxS/PdxT pathway)(NFUNC_0059)
必須A
PDXS
(NRULE_0206)
Pyridoxal biosynthesis lyase PdxSSACE_2009
PDXT
(NRULE_0207)
Glutamine amidotransferase subunit PdxTSACE_2017

ゲノム配列情報

BioProject IDPRJEA18489
ローカスタグSACE
INSDC entriesAM420293
ステータスComplete
解析状況
コンティグ数1
サイズ(bp) 8,212,805
遺伝子数 7,197
フィニッシングゴール
アセンブル方法
冗長度
シーケンス方法
参考文献
  • Complete genome sequence of the erythromycin-producing bacterium Saccharopolyspora erythraea NRRL23338. (Nat Biotechnol. 2007) PMID: 17369815

データダウンロード

ゲノム塩基配列 CDS塩基配列 CDSアミノ酸変換配列 遺伝子/ORF リスト
FASTA
gz		 FASTA
gz		 FASTA
gz		 TSV
uncompressed
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