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Microbe : Rhizobium etli

Microbe Description

NBRC No. 15573
Scientific name Rhizobium etli
Synonymous name Not assigned
History IFO 15573 <- E. Martinez-Romero, CFN 42
Other culture collection No. ATCC 51251=CIP 104814=DSM 11541=HAMBI 1727=IAM 15379=JCM 21823=LMG 17827
Other No. CFN 42
Reference
8494746
Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov. (Int J Syst Bacteriol. 1993)

Functional Potential >>Details

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TypePattern Component Gene CDS
Alanine racemization(NFUNC_0063)
RequireA
ALR
(NRULE_0228)
Alanine racemaseRHE_PF00437 RHE_CH01432
D-allose biosynthesis(NFUNC_0077)
RequireA
LRHI
(NRULE_0242)
L-rhamnose isomeraseRHE_PE00292
Aminoglycoside resistance (by aminoglycoside N-acetyltransferase)(NFUNC_0041)
RequireA
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseRHE_CH01086
Aminoglycoside resistance (by aminoglycoside O-phosphotransferase)(NFUNC_0043)
RequireA
APH6
(NRULE_0155)
Streptomycin 6-kinaseRHE_CH02980
B
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseRHE_CH02947
Ampicillin resistance(NFUNC_0046)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ARHE_CH01220
Anthranilate biosynthesis(NFUNC_0038)
RequireA
GLAT
(NRULE_0142)
Glutamine amidotransferaseRHE_CH03075
TRPE
(NRULE_0143)
Anthranilate synthase component IRHE_CH03075
Arginine degradation(NFUNC_0074)
RequireA
ARGI
(NRULE_0239)
ArginaseRHE_CH03851
Aromatic azo compounds degradation(NFUNC_0073)
RequireA
AZOR
(NRULE_0236)
FMN-dependent NADH-azoreductaseRHE_CH01764 RHE_PC00047
Bacitracin resistance(NFUNC_0022)
RequireA
UPPP
(NRULE_0097)
Undecaprenyl-diphosphataseRHE_CH00310
Beta-lactam antibiotic resistance(NFUNC_0033)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ARHE_CH01220
C
BLAC
(NRULE_0124)
Beta-lactamase class CRHE_CH03194
Betaine biosynthesis (from choline)(NFUNC_0049)
RequireA
BETA
(NRULE_0175)
Choline dehydrogenaseRHE_CH01136
Bioplastic degradation(NFUNC_0015)
RequireA
PHAZ1
(NRULE_0023)
Intracellular poly(3-hydroxyalkanoate) depolymeraseRHE_CH00017
B
PHAZ2
(NRULE_0080)
Poly(3-hydroxyalkanoate) depolymeraseRHE_CH01009
Bioplastic synthesis(NFUNC_0001)
RequireA
PHAC1
(NRULE_0010)
Poly(3-hydroxyalkanoate) polymeraseRHE_CH01875
Participant 
PHAB
(NRULE_0011)
Acetoacetyl-CoA reductaseRHE_CH04019
 
PHAP1
(NRULE_0374)
PhasinRHE_PD00340 RHE_PD00301 RHE_PD00186 RHE_CH00721
Cephalosporin resistance(NFUNC_0048)
RequireA
BLAC
(NRULE_0124)
Beta-lactamase class CRHE_CH03194
Participant 
BLAA
(NRULE_0122)
Beta-lactamase class ARHE_CH01220
Kanamycin resistance(NFUNC_0052)
RequireC
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseRHE_CH02947
Participant 
AAC3
(NRULE_0149)
Aminoglycoside N(3')-acetyltransferaseRHE_CH01086
Macrolide antibiotic resistance(NFUNC_0045)
RequireD
ERE
(NRULE_0168)
Erythromycin esteraseRHE_PB00041
Metal-binding protein(NFUNC_0105)
RequireA
MOP
(NRULE_0322)
Putative molybdenum-binding proteinRHE_PE00180 RHE_PF00090 RHE_PF00207 RHE_PF00293 RHE_PF00319 RHE_PF00377 RHE_CH03840 RHE_CH03679 RHE_CH02894 RHE_CH02071 RHE_CH02056 RHE_PF00378 RHE_PC00036 RHE_CH04073 RHE_PC00104 RHE_PE00097
C
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRHE_CH00696 RHE_CH00972 RHE_CH02127 RHE_CH02725 RHE_CH03415 RHE_CH03844 RHE_CH04056 RHE_CH04071 RHE_PF00374 RHE_PF00211
E
CUER
(NRULE_0328)
Copper-responsive transcriptional regulator CueRRHE_PE00006
F
SOXR
(NRULE_0329)
Redox-sensitive transcriptional activator SoxRRHE_CH03863 RHE_PF00560
Molybdate transport (ABC transporter)(NFUNC_0097)
RequireA
MODA
(NRULE_0324)
Molybdate ABC transporter substrate-binding proteinRHE_CH00972 RHE_CH00696 RHE_CH02127 RHE_CH02725 RHE_CH03415 RHE_CH03844 RHE_CH04056 RHE_CH04071 RHE_PF00211 RHE_PF00374
Participant 
MODB
(NRULE_0325)
Molybdate ABC transporter permease proteinRHE_CH04072
 
MODC
(NRULE_0326)
Molybdate ABC transporter ATP-binding proteinRHE_CH04073
Nitrile hydratase(NFUNC_0002)
RequireA
NHAA
(NRULE_0001)
Nitrile hydratase subunit alphaRHE_CH02783
NHAB
(NRULE_0002)
Nitrile hydratase subunit betaRHE_CH02782
Participant 
P14K
(NRULE_0006)
Nitrile hydratase activator P14KRHE_CH02781
 
COBW
(NRULE_0007)
CobW/P47K family proteinRHE_CH03625 RHE_CH03831 RHE_CH01373 RHE_CH01375 RHE_CH02490 RHE_CH02713
Nitrogenase(NFUNC_0094)
RequireA
NIFD
(NRULE_0347)
Nitrogenase molybdenum-iron protein alpha chainRHE_PD00307 RHE_PD00201
NIFK
(NRULE_0348)
Nitrogenase molybdenum-iron protein beta chainRHE_PD00200 RHE_PD00306
VNFH
(NRULE_0353)
Nitrogenase reductaseRHE_PD00308 RHE_PD00260 RHE_PD00202
Penicillin resistance(NFUNC_0047)
RequireA
BLAA
(NRULE_0122)
Beta-lactamase class ARHE_CH01220
Protocatechuate degradation (beta-ketoadipate pathway)(NFUNC_0014)
RequireA
PCAG
(NRULE_0066)
Protocatechuate 3,4-dioxygenase alpha subunitRHE_PE00056
PCAH
(NRULE_0067)
Protocatechuate 3,4-dioxygenase beta subunitRHE_PE00057
PCAB
(NRULE_0068)
3-carboxy-cis,cis-muconate cycloisomeraseRHE_PE00055
PCAC
(NRULE_0069)
4-carboxymuconolactone decarboxylaseRHE_PE00058
PCAD
(NRULE_0070)
3-oxoadipate enol-lactonaseRHE_PE00059
PCAI
(NRULE_0072)
3-oxoadipate CoA-transferase subunit ARHE_PE00201
PCAJ
(NRULE_0073)
3-oxoadipate CoA-transferase subunit BRHE_PE00202
PCAF
(NRULE_0074)
Beta-ketoadipyl-CoA thiolaseRHE_PE00203
Streptomycin resistance(NFUNC_0054)
RequireC
APH6
(NRULE_0155)
Streptomycin 6-kinaseRHE_CH02980
Participant 
APH3
(NRULE_0156)
Aminoglycoside 3'-phosphotransferaseRHE_CH02947
Trehalose biosynthesis (from maltooligosaccharide)(NFUNC_0037)
RequireA
TREY
(NRULE_0140)
Maltooligosyl trehalose synthaseRHE_PE00008
TREZ
(NRULE_0141)
Malto-oligosyltrehalose trehalohydrolaseRHE_PF00263 RHE_CH03279
Participant 
GLGX
(NRULE_0139)
Glycogen debranching enzymeRHE_CH03598 RHE_PE00208
Trehalose biosynthesis (from maltose)(NFUNC_0034)
RequireB
TRES
(NRULE_0128)
Trehalose synthaseRHE_PF00276
Trehalose biosynthesis (from NDP-glucose and glucose-6-phosphate)(NFUNC_0031)
RequireA
TPS
(NRULE_0119)
Trehalose-phosphate synthaseRHE_CH00476
TPP
(NRULE_0120)
Trehalose-6-phosphate phosphataseRHE_PC00228
Uptake of osmoprotectant(NFUNC_0061)
RequireB
EHUB
(NRULE_0216)
Ectoine ABC transporter substrate-binding proteinRHE_PF00186
EHUC
(NRULE_0217)
Ectoine ABC transporter permease proteinRHE_PF00185
EHUD
(NRULE_0218)
Ectoine ABC transporter permease proteinRHE_PF00184
EHUA
(NRULE_0219)
Ectoine ABC transporter ATP-binding proteinRHE_PF00187

Genomic Overview

BioProject IDPRJNA13932
Locus_tag
INSDC entriesCP000133
Sequence statusComplete
Current status
Contig number7
Size(bp) 6,530,228
Gene 5,963
Finishing goal
Assembly method
Coverage
Technology
Reference
  • The partitioned Rhizobium etli genome: genetic and metabolic redundancy in seven interacting replicons. (Proc Natl Acad Sci U S A. 2006) PMID: 16505379

Data Download

Genomic nucleotide sequence Nucleotide sequence of the coding regions Translation of the coding sequneces List of genes / ORFs
FASTA
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FASTA
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FASTA
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TSV
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1.9 MB 1.7 MB 1.2 MB 528.5 KB